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Details




NbTI01H11

Phenotype Description
Moderately stunted, bushy plants, mottled, chlorotic leaves
Annotation
Solyc04g078400.2.1;genomic_reference:SL2.50ch04 gene_region:60737092-60744774 transcript_region:SL2.50ch04:60737092..60744774+ functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR008676 MRG "
ref|XP_009609315.1|;PREDICTED: nuA4 complex subunit EAF3 homolog isoform X1 [Nicotiana tomentosiformis]
NbS00021205g0007.1;protein AED:0.19 eAED:0.24 QI:143|0.8|0.72|1|0.6|0.63|11|263|410; (*GB) gi|302142251|emb|CBI19454.3| (e_value=7e-111) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q6AYU1|MO4L1_RAT (e_value=2e-44) Mortality factor 4-like protein 1 OS=Rattus norvegicus GN=Morf4l1 PE=2 SV=1;; (*TAIR) AT4G37280.1 (e_value=3e-99) | Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320;; (*ITAG) Solyc04g078400.2.1 (e_value=8e-137) genomic_reference:SL2.40ch04 gene_region:60737092-60744774 transcript_region:SL2.40ch04:60737092..60744774+ functional_description:"Chromatin modification-related protein EAF3 (AHRD V1 **-- B6TDE5_MAIZE); contains Interpro domain(s) IPR008676 MRG ";
AT4G37280.1;| Symbols: | MRG family protein | chr4:17546748-17549362 REVERSE LENGTH=320
GO ID (Nr annotation)
GO:0005634 GO:0006355 GO:0016568
GO ID (Arabidopsis annotation)
GO:0005634 GO:0006355 GO:0016568
GO ID (Tomato annotation)
GO:0005634 GO:0006355 GO:0016568
GO ID (Niben annotation)
GO:0005634 GO:0006355 GO:0016568
Sequence
>NbTI01H11
TGATCGGTTGAGCTTCTTATTTACAATAAACCCTTTTGGTTCATTGCCACTATTATTCTACAGAAAATCAAAGAAAATGGGGAGCTCAAATGCTGGAGTA
TCAGAAGATTCCACAACCATCTCTGATGAAGTTGGAGGCACCACTCATGATACTGACATTGACGGGGTTGACTCCAGTCGTTTTCAAGAAGGTGAAAAAG
TACTCGCCTTTCATAGCCAGCAACTTTATGAAGCTAAGATTCAAAAAGCTGAGTTTCAAATGAGGGAGTGGAGATATTTTGTTCATTATCTTGGTTGGAA
CAAAAACTGGGATGAATGGGTGGGCATAGATCGACTGATGACACTCACAGAAGAGAATATTCAGAAGCAGCAGGAGCTTAAGGAAAAACAGGATACAGAT
AAGAGTTCAAAGGGTGGACGTGGGTCACAAATGAAAACAAAAGGCTCTACAGGGGGAAGAGGCAGAAAGCGAAAGAGTGATGTTCCGCAGAAGGACAAGT
ATGCTCTTCCTCCAGAAAAGCTTGTCAATATCCAAATACCGCCACAATTAAAGAAACAGCTGATTGATGATTGTGAATTTGTCAACCACTTGGGCAAGCT
CGTCAAACTTCCACGTTCTCCAAATGTTGATGAAATACTAAAGAAGTATCATGACTATCGGCTGAAAAAAGGATGGAGTGATATCTGATTCTGTTGGAGA
GATTCTTAGTGGTCTGCAATGCTACTTCGACAAAGCACTGCCTGCTATGCTCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1H11.JPG