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Details




NbTI02C04

Phenotype Description
Moderate to severely stunted plants, pale green leaves
Annotation
Solyc02g080540.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch02 gene_region:39325443-39326576 transcript_region:SL2.50ch02:39325443..39326576+ functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit "
ref|XP_009760449.1|;PREDICTED: ATP synthase gamma chain, chloroplastic [Nicotiana sylvestris]
NbS00023165g0008.1;protein AED:0.11 eAED:0.12 QI:0|0|0|1|0|0.5|2|0|394; (*GB) gi|231610|sp|P29790.1|ATPG_TOBAC (e_value=0.0) RecName: Full=ATP synthase gamma chain, chloroplastic; AltName: Full=F-ATPase gamma subunit; Flags: Precursor;; (*SWP) sp|P29790|ATPG_TOBAC (e_value=0.0) ATP synthase gamma chain, chloroplastic OS=Nicotiana tabacum GN=ATPC PE=1 SV=1;; (*TAIR) AT4G04640.1 (e_value=0.0) | Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373;; (*ITAG) Solyc02g080540.1.1 (e_value=0.0) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch02 gene_region:39325443-39326576 transcript_region:SL2.40ch02:39325443..39326576+ functional_description:"ATP synthase gamma chain (AHRD V1 ***- B7FIR4_MEDTR); contains Interpro domain(s) IPR000131 ATPase, F1 complex, gamma subunit ";
AT4G04640.1;| Symbols: ATPC1 | ATPase, F1 complex, gamma subunit protein | chr4:2350761-2351882 REVERSE LENGTH=373
GO ID (Nr annotation)
GO:0045261 GO:0046933 GO:0046961 GO:0015986
GO ID (Arabidopsis annotation)
GO:0045261 GO:0046933 GO:0046961 GO:0015986
GO ID (Tomato annotation)
GO:0045261 GO:0046933 GO:0046961 GO:0015986
GO ID (Niben annotation)
GO:0045261 GO:0046933 GO:0046961 GO:0015986
Sequence
>NbTI02C04
CTTAGCCCTTTTCAGATTCCTAACCATAACTCATCAGGTCATTCAAACCCCTCAAGATCATCATCAGTCACCCCTGTTCACTGTGGTCTCCGTGATCTGC
GTGAACGGATTGACTCAGTCAAGAACACCCAGAAAATTACTGAGGCTATGAAGCTTGTTGCTGCTGCTAAAGTCAGAAGAGCTCAAGAAGCTGTTGTGGG
TGCTAGGCCTTTCTCTGAGACTTTGGTTGAGGTCCTTTACAACATTAATGAACAGCTTCAAACTGATGACATTGATGTTCCCCTCACCAAAGTTAGACCT
GTCAAGAAAGTGGCTTTGGTTGTTGTCACTGGTGACCGTGGTCTTTGTGGTGGTTTTAACAACTACCTCATCAAAAAAGCTGAGGCCAGGATTAAAGATT
TGAAAGCTCTTGGCATTGAATACACTATAATCAGTGTTGGCAAAAAGGGTAATTCTTATTTCCTCCGTAGGCCTTACATTCCTGTAGATAAGTTCCTTGA
AGGAAGCAATTTGCCCACTGCTAAAGATGCTCAGGCCATTGCTGATGATGTTTTCTCGCTTTTCGTGAGTGAAGAGGTTGACAAAGTTGAGCTTTTGTAC
ACAAAGTTTGTGTCTTTAGTGAAATCTGAGCCAGTGATTCACACCTTGCTTCCATTTGTCACCAAAGGGAGAGATTTGTGACATCAATGGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2A1-2D12[[7-10-12]//2C4..JPG