Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI02F07

Phenotype Description
Moderately stunted plants, cell death in apical meristem, crinkled top leaves
Annotation
Solyc09g090870.2.1;genomic_reference:SL2.50ch09 gene_region:65605318-65639030 transcript_region:SL2.50ch09:65605318..65639030- functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-** C8PCK3_9LACO); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal "
ref|XP_009589028.1|;PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X2 [Nicotiana tomentosiformis]
NbS00021509g0004.1;protein AED:0.22 eAED:0.22 QI:728|0.94|0.89|0.94|0.61|0.52|19|258|716; (*GB) gi|61696673|gb|AAX53097.1| (e_value=0.0) DNA mismatch repair protein [Solanum lycopersicum];; (*SWP) sp|A8YTH9|MUTS_LACH4 (e_value=4e-27) DNA mismatch repair protein MutS OS=Lactobacillus helveticus (strain DPC 4571) GN=mutS PE=3 SV=1;; (*TAIR) AT3G24320.1 (e_value=0.0) | Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118;; (*ITAG) Solyc09g090870.2.1 (e_value=0.0) genomic_reference:SL2.40ch09 gene_region:65605318-65639030 transcript_region:SL2.40ch09:65605318..65639030- functional_description:"DNA mismatch repair protein mutS (AHRD V1 *-** C8PCK3_9LACO); contains Interpro domain(s) IPR000432 DNA mismatch repair protein MutS, C-terminal ";
AT3G24320.1;| Symbols: MSH1, CHM1, ATMSH1, CHM | MUTL protein homolog 1 | chr3:8823229-8829571 REVERSE LENGTH=1118
GO ID (Nr annotation)
GO:0000228 GO:0016021 GO:0032300 GO:0003684 GO:0005524 GO:0030983 GO:0000710 GO:0007131
GO ID (Arabidopsis annotation)
GO:0000786 GO:0005634 GO:0003677 GO:0006334
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0004022 GO:0004146 GO:0004799 GO:0006066 GO:0006231 GO:0006545 GO:0006730 GO:0032259 GO:0046654 GO:0055114
Sequence
>NbTI02F07
CCATCTTTGTTTAAGGCGGGAATGGGAAATGCTTCATTCCTATCATTCCTAGTCCCTGGCAAGAGCATAGCCTGTCAACTGGAAACTCTTCTAATAAACC
AACTTCCTGATTATGGCTTTCAGCAAACCAACATTGCTGATGGTAGGCATCGTAATTTTGGCACGACTAGTCTCTCCCTGGAACCTTCATCCGCGCTTAG

More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2E1-2H12[7-9-12]//2F7..JPG