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Details




NbTI01A02

Phenotype Description
Stunted plants, chlorotic leaves, small, crinckled top leaves
Annotation
Solyc02g085950.2.1;genomic_reference:SL2.50ch02 gene_region:43293286-43294312 transcript_region:SL2.50ch02:43293286..43294312+ functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain "
sp|P26573.1|RBS8_NICPL;RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursoremb|CAA31994.1| ribulose bisphosphate carboxylase [Nicotiana plumbaginifolia]gb|AAA34110.1| ribulose bisphosphate carboxylase [Nicotiana plumbaginifolia]
NbS00042812g0008.1;protein AED:0.19 eAED:0.19 QI:0|1|1|1|1|1|4|386|180; (*GB) gi|132118|sp|P26573.1|RBS8_NICPL (e_value=3e-119) RecName: Full=Ribulose bisphosphate carboxylase small chain 8B, chloroplastic; Short=RuBisCO small subunit 8B; Flags: Precursor;; (*SWP) sp|P26573|RBS8_NICPL (e_value=8e-121) Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1;; (*TAIR) AT5G38410.1 (e_value=2e-94) | Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181;; (*ITAG) Solyc02g085950.2.1 (e_value=4e-118) genomic_reference:SL2.40ch02 gene_region:43293286-43294312 transcript_region:SL2.40ch02:43293286..43294312+ functional_description:"Ribulose bisphosphate carboxylase small chain (AHRD V1 ***- A9YTZ7_SOLTU); contains Interpro domain(s) IPR000894 Ribulose bisphosphate carboxylase, small chain ";
AT5G38410.1;| Symbols: | Ribulose bisphosphate carboxylase (small chain) family protein | chr5:15377501-15378306 REVERSE LENGTH=181
GO ID (Nr annotation)
GO:0009507 GO:0004497 GO:0005515 GO:0016984 GO:0009853 GO:0019253 GO:0055114
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005576 GO:0005634 GO:0005667 GO:0005737 GO:0005886 GO:0001046 GO:0001515 GO:0003700 GO:0003924 GO:0004871 GO:0005159 GO:0005525 GO:0031683 GO:0031698 GO:0031748 GO:0031852 GO:0035255 GO:0046872 GO:0051430 GO:0001662 GO:0001964 GO:0002118 GO:0006006 GO:0006351 GO:0006631 GO:0006687 GO:0007191 GO:0007218 GO:0007283 GO:0007606 GO:0007626 GO:0019233 GO:0019933 GO:0030819 GO:0032922 GO:0042742 GO:0042752 GO:0043547 GO:0043950 GO:0045892 GO:0045944 GO:0048384 GO:0051591 GO:0071880
Sequence
>NbTI01A02
GGGAGAAAGAGAAATCTTTCTGTCTTAAGAGTAATTAGCAATGGCTTCCTCAGTTCTTTCCTCAGCAGCAGTTGCCACCCGCAGCAATGTTGCTCAAGCT
AACATGGTTGCACCTTTCACAGGTCTTAAGTCTGCTGCCTCATTCCCTGTTTCAAGAAAGCAAAACCTTGACATCACTTCCATTGCCAGCAACGGCGGAA
GAGTGCAATGCATGCAGGTGTGGCCACCAATTAACATGAAGAAGTATGAGACTCTCTCATACCTTCCCGATTTGAGCCAGGAGCAATTGCTCTCCGAAAT
TGAGTACCTTTTGAAAAATGGATGGGTTCCTTGCTTGGAATTCGAGACTGAGAAAGGATTTGTCTACCGTGAACACCACAAGTCACCAGGATACTATGAT
GGCAGATACTGGACCATGTGGAAGCTACCTATGTTCGGATGCACTGATGCCACCCAAGTGTTGGCTGAGGTGGGAGAGGCGAAGAAGGAATACCCACAGG
CCTGGGTCCGTATCATTGGATTTGACAACGTGCGTCAAGTGCAGTGCATCAGTTTCATTGCCTCCAAGCCTGACGGCTACTGAGTTTCATATTAGGACAA
CTTACCCTATTGTCTGTCTTTAGGGGCAGTTTGTTTGAAATGTTACTTAGCTTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

5-1:1A1-1D12 [6-20-12]//1A2-4.JPG