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Details




NbTI01A07

Phenotype Description
Stunted plants, short internodes, crinkled, mottled, pale green leaves
Annotation
Solyc03g096920.2.1;genomic_reference:SL2.50ch03 gene_region:52731408-52746719 transcript_region:SL2.50ch03:52731408..52746719- functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal "
ref|XP_009764334.1|;PREDICTED: exportin-1-like isoform X2 [Nicotiana sylvestris]
NbS00026709g0014.1;protein AED:0.21 eAED:0.21 QI:452|0.96|0.96|1|0.86|0.93|31|888|1090; (*GB) gi|350535206|ref|NP_001234182.1| (e_value=0.0) exportin 1 [Solanum lycopersicum];; (*SWP) sp|Q6P5F9|XPO1_MOUSE (e_value=0.0) Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1;; (*TAIR) AT5G17020.2 (e_value=0.0) | Symbols: XPO1A | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1060;; (*ITAG) Solyc03g096920.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:52731408-52746719 transcript_region:SL2.40ch03:52731408..52746719- functional_description:"Exportin-1 (AHRD V1 ***- D1MAF2_SOLLC); contains Interpro domain(s) IPR014877 Exportin 1, C-terminal ";
AT5G17020.2;| Symbols: XPO1A | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1060
GO ID (Nr annotation)
GO:0005643 GO:0005829 GO:0004872 GO:0005515 GO:0008565 GO:0000059 GO:0006611 GO:0009408 GO:0009553 GO:0009555 GO:0009846 GO:0009860
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01A07
TTCCTCGTTCAATCAAAAGAGTTCTCCTCTCAGGACAATAAGGACCTTTTTGCCGAGGAAGCAGCTGCTCAGAGAGAAAGGGAACGGCAGCGGATGCTTT
CTATTCCTGGTCTAATTGCATCTAATGAGATACAGGATGAAATGGTTGACTCATGAGATACAAAATGCCCCCCATATATAGATACTTCATTCCGTTTTAT
GCCCCTGGAGGTTGTGTGGGTGCTTGGAGTGTGTTATCACGAACTGTAGTGGCCAGCACGTCCTATTTTAAAAGAATTTCTATCATGTTGCGAAAATTTT
CTCAGAGTAGTAGTGGAAATGGTATCTAGGACTCATGTCAATGATTCCAAGAAAAGGATTGGCTGGGTGTAAAGTAATTAGATCCTAATCTAGGAGTACA
GTGTGTTTATTGGACATTCATGGTTTCTTTCGATATTGTAGTTGGTTAGAGTAGTTGATGGATTGTTGCATTGACATCATTCAGCCAT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1A1-1D12 [6-20-12]//1A7-2.JPG