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Details




NbTI01A11

Phenotype Description
Pale green leaves
Annotation
Solyc04g074750.2.1;genomic_reference:SL2.50ch04 gene_region:58271847-58273865 transcript_region:SL2.50ch04:58271847..58273865- functional_description:"Polyadenylate-binding protein 1-A (AHRD V1 **-* PAP1A_DICDI); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 "
ref|XP_009770625.1|;PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Nicotiana sylvestris]
NbS00013950g0033.1;protein AED:0.15 eAED:0.15 QI:119|0.75|0.6|1|0.5|0.6|5|0|303; (*GB) gi|147769276|emb|CAN61580.1| (e_value=3e-70) hypothetical protein VITISV_008033 [Vitis vinifera];; (*SWP) sp|P19682|ROC3_NICSY (e_value=1e-17) 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1;; (*TAIR) AT4G09040.1 (e_value=9e-61) | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:5795075-5797315 REVERSE LENGTH=304;; (*ITAG) Solyc04g074750.2.1 (e_value=2e-123) genomic_reference:SL2.40ch04 gene_region:58271847-58273865 transcript_region:SL2.40ch04:58271847..58273865- functional_description:"Polyadenylate-binding protein 1-A (AHRD V1 **-* PAP1A_DICDI); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1 ";
AT4G09040.1;| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:5795075-5797315 REVERSE LENGTH=304
GO ID (Nr annotation)
GO:0000166 GO:0003676
GO ID (Arabidopsis annotation)
GO:0000166 GO:0003676
GO ID (Tomato annotation)
GO:0000166 GO:0003676
GO ID (Niben annotation)
GO:0000166 GO:0003676
Sequence
>NbTI01A11
TCAGCTTCATTTCTCCACCACCCAATTCCCTTCTTCTTCTTCTTCTTCTTCTTCACCCGCTTTGTTCCCCCTTCGCCACCAATCTGCAATTCCCATTTTA
TCCCCTTCTACCGTTTCTTTGCACATTTCTTCTTTATCCCCATTACTCCCTATTAAACCCCAAAAAACCTACCTTTACATCTCCCATTGCTCTTCGTCGG
CCCAAACTCCAGAATTGCAACAAGACCAAGAAGAACAATCGGAAGATGAAAGTTCTAGAACAAGAATTCTTGCTCAGAATGCTCCTTGGACTTCCACAGC
GGATGACCTTCGCCCTCTGTTTCAGAAATATGGTACTGTTACGGATATTGAGGTTGCAATGTACAACAAGACCAGAAGCAGGGGTTTAGTCTTTGTCACA
ATGGGTTCTCATGAGGAAGCTAAGGCAGTTCTTGAAAATCTTGAAGCCTATGAACTTGAGGGTAGACCATTGAGACTTGCCTGGGCTAAGCCAAAGACTG
TGAAACCTTCTTCTCCGCCGCCGTCCAAGCGGCTGCCTGTACACAATGTATTCGTGGATAATTTGCATTTTGAAGCAAGGTCTAAAGGATCTTATGGAGT
TCTTTTAAGGCTAATGGGGCAGATGTTGTTTCTGCTGAAAGTCATATTCAACAGTGATAATCCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1A1-1D12 [6-20-12]//1A11-2.JPG