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Details




NbTI01A12

Phenotype Description
Severely stunted plants, complete death of new growth, cell death, thick, crinkled leaves
Annotation
Solyc05g013030.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch05 gene_region:6145882-6147153 transcript_region:SL2.50ch05:6145882..6147153+ functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8I274_CHLRE); contains Interpro domain(s) IPR013143 PCI/PINT associated module "
ref|XP_009779951.1|;PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Nicotiana sylvestris]
NbS00048446g0001.1;protein AED:0.22 eAED:0.22 QI:299|1|0.66|1|0|0|3|0|423; (*GB) gi|225451255|ref|XP_002277010.1| (e_value=0.0) PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 isoform 2 [Vitis vinifera];; (*SWP) sp|Q8BG32|PSD11_MOUSE (e_value=6e-133) 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus GN=Psmd11 PE=1 SV=3;; (*TAIR) AT1G29150.1 (e_value=0.0) | Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419;; (*ITAG) Solyc05g013030.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch05 gene_region:6145882-6147153 transcript_region:SL2.40ch05:6145882..6147153+ functional_description:"26S proteasome regulatory subunit (AHRD V1 ***- A8I274_CHLRE); contains Interpro domain(s) IPR013143 PCI/PINT associated module ";
AT1G29150.1;| Symbols: ATS9, RPN6 | non-ATPase subunit 9 | chr1:10181240-10182499 FORWARD LENGTH=419
GO ID (Nr annotation)
GO:0000502
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005634 GO:0005829 GO:0031264 GO:0045121 GO:0002020 GO:0004022 GO:0004190 GO:0004861 GO:0005123 GO:0016005 GO:0032403 GO:0097200 GO:0001666 GO:0001782 GO:0006066 GO:0006974 GO:0007507 GO:0007605 GO:0007611 GO:0009411 GO:0009749 GO:0010165 GO:0016485 GO:0021766 GO:0030182 GO:0030216 GO:0030218 GO:0030889 GO:0032025 GO:0032355 GO:0032496 GO:0034349 GO:0035094 GO:0035556 GO:0042060 GO:0042493 GO:0042542 GO:0043029 GO:0043066 GO:0043085 GO:0043200 GO:0043525 GO:0045165 GO:0045736 GO:0046007 GO:0046677 GO:0048011 GO:0051384 GO:0051402 GO:0055114 GO:0071407 GO:0097194
Sequence
>NbTI01A12
CACAGCTGCTCGAACAGCAGCCAATGCTATTTATGTGCCTCCAGCTCAGCAAGGTTCTATTGATTTGCAGAGCGGGATCCTTCATGCGGAAGAAAAGGAT
TATAAAACTGGTTACAGCTATTTCTATGAAGCATTTGAAGCATTCAATGCCCTTGAAGATCCGCAGGCCATATACAGCCTCAAGTATATGTTGCTTTGCA
AAATCATGGTCAACCAGTCTGATGATGTTGCAGGAATAACATCATCCCCAAAGGTTGGATTGCAATATCAGGGGCCAGAAGTCGATGCAATGAAAGCTGT
TGCGGATGCACATTCCAAGCGCTCCTTGAAGCTCTTCGAGACTGCTCTTCGGAACTTTAAGGCTCAGCTAGATGAAGATCCTATCGTCCACCGGCACCTG
TCTTCCCTCTATGACACTTTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

3-1:1A1-1D12 [6-20-12]//1A12--2.JPG