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Details




NbTI01B08

Phenotype Description
Stunted, bushy plants, more branches (loss of apical dominance), short internode, small chlorotic leaves, crinkled leaves
Annotation
Solyc07g044810.2.1;genomic_reference:SL2.50ch07 gene_region:55163956-55178160 transcript_region:SL2.50ch07:55163956..55178160- functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 "
ref|XP_009608372.1|;PREDICTED: probable endoplasmic reticulum-Golgi intermediate compartment protein 3 [Nicotiana tomentosiformis]
NbS00059302g0004.1;protein AED:0.34 eAED:0.37 QI:191|0.72|0.83|1|0.54|0.58|12|411|295; (*GB) gi|356575088|ref|XP_003555674.1| (e_value=3e-140) PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max];; (*SWP) sp|Q803I2|ERGI3_DANRE (e_value=5e-37) Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1;; (*TAIR) AT3G22290.1 (e_value=5e-140) | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354;; (*ITAG) Solyc07g044810.2.1 (e_value=7e-141) genomic_reference:SL2.40ch07 gene_region:55163956-55178160 transcript_region:SL2.40ch07:55163956..55178160- functional_description:"Endoplasmic reticulum-Golgi intermediate compartment protein 3 (AHRD V1 ***- C0H9D0_SALSA); contains Interpro domain(s) IPR012936 Protein of unknown function DUF1692 ";
AT3G22290.1;| Symbols: | Endoplasmic reticulum vesicle transporter protein | chr3:7882082-7885260 FORWARD LENGTH=354
GO ID (Nr annotation)
GO:0005783 GO:0016021
GO ID (Arabidopsis annotation)
GO:0005747 GO:0005759 GO:0004709 GO:0005504 GO:0008137 GO:0000165 GO:0006120 GO:0006633
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005615 GO:0005634 GO:0005829 GO:0005891 GO:0042383 GO:0070062 GO:0001758 GO:0004028 GO:0004692 GO:0004709 GO:0005245 GO:0005246 GO:0005524 GO:0018479 GO:0030553 GO:0042802 GO:0000165 GO:0001822 GO:0001889 GO:0002072 GO:0006811 GO:0006886 GO:0006913 GO:0006979 GO:0007494 GO:0032355 GO:0032526 GO:0042493 GO:0042572 GO:0042904 GO:0043065 GO:0043087 GO:0044849 GO:0045471 GO:0051289 GO:0055114 GO:0090331 GO:1902580 GO:1902582
Sequence
>NbTI01B08
ACTCCTCACATCATTGAATTTTCTTAAATTTTATGATTTTTTCTTCCCCAGAAATGTCTGATTTTTAGCTTTGATCTAATCGACGAACTTTATTTTGTTT
TTGAACGGCAGTCTTCTAGTTGATTTGGTTGCAGTATTATAAAATTGAGCAGAAAATATAGAGAAGAGATGGGGGTGAAGCAAGTTCTAAAAGCCCTGGA
TGCTTTTCCACGCGCAGATGATCATTTGTTACAGAAAACTAAATCTGGCGCCTTTGTTTCCATTGTGGGGCTGGTTATCATGGCAACACTATTTTTGCAT
GAACTGAGTTACTATCTTAGTACAAATACAGTTCATCAGATGGCTGTTGACTTGAGACGTGGAGAGACTCTACCCATACACATTAATATGACATTCCCCT
CTTTACCTTGTGATGTTCTAAGTGTGGATGCAATTGATATGTCGGGGAAGCATGAAGTAGACCTTGATACAAACATATGGAAGTTGGAGGGATAAGATGC
AGCAGTAACGGGCTTCGCTTGAACAGTGATGGCCATATTACTGGAATTGAGTATTTGTCGGACCTTGTGGAAAAGAAACATAAACATGATGACCACAAAG
ACCATCATGAAGATTCAGATAACAAAACCCATCTGCAAGGGTTCGATCAAGATGCTGAAAATATGATTAAGAAGGTGAAGCAAGCATTGGCTAATGGGGA
GGGATGCAGAGTCTATGGTGTTTTGGATGTCCAACGTGTTGCTGGGAATTTCCATATATCTGTTCATGGGTTGAATATTTTTGTTGCTCAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1A1-1D12 [6-20-12]//1B8--2.JPG