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Details




NbTI01B11

Phenotype Description
More branches, yellow green, mottled leaves
Annotation
Solyc01g087040.2.1;genomic_reference:SL2.50ch01 gene_region:73725748-73726716 transcript_region:SL2.50ch01:73725748..73726716+ functional_description:"Thylakoid lumenal 19 kDa protein, chloroplastic (AHRD V1 ***- TL19_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich "
ref|XP_009771604.1|;PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Nicotiana sylvestris]
NbS00007371g0002.1;protein AED:0.25 eAED:0.25 QI:0|-1|0|1|-1|1|1|0|245; (*GB) gi|224104053|ref|XP_002313298.1| (e_value=2e-90) predicted protein [Populus trichocarpa];; (*SWP) sp|P82658|TL19_ARATH (e_value=1e-88) Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At3g63540 PE=1 SV=2;; (*TAIR) AT3G63540.1 (e_value=1e-82) | Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:23459372-23459803 REVERSE LENGTH=143;; (*ITAG) Solyc01g087040.2.1 (e_value=9e-102) genomic_reference:SL2.40ch01 gene_region:73725748-73726716 transcript_region:SL2.40ch01:73725748..73726716+ functional_description:"Thylakoid lumenal 19 kDa protein, chloroplastic (AHRD V1 ***- TL19_ARATH); contains Interpro domain(s) IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich ";
AT3G63540.1;| Symbols: | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein | chr3:23459372-23459803 REVERSE LENGTH=143
GO ID (Nr annotation)
GO:0009654 GO:0019898 GO:0005509 GO:0015979
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO:0005634 GO:0005737 GO:0004707 GO:0005524 GO:0019901 GO:0042803 GO:0046982 GO:0000165
GO ID (Niben annotation)
Sequence
>NbTI01B11
CATCCACCCCTCATCTTTCCTTTCCTCCTCCTCCTCCACCATCTCTACAACCACAAAACCACCAATTCCACCACCCTTTTCGAGACCCCACGCCACCCTT
TCACCGCCCACTAAACCACTTCTAATCAAATTAACCACGACCTTAACAGCCACAGCATTAGCAACCACAATATTAACAACCGCTAGCCCGTCGCTAGCAG
ACTCTCCTACAACCTACCACATTTACTATGGCACAGCAGCTAGCGCCGCCAACTACGGTGGCTACGGTGGAAACTCCGACAAAAAGGCGTCGGCCGAGTA
CATTTACGATGTCCCGGATGGATGGAAAGAGCGGCTGGTGTCAAAAGTTGAGAAGGGAACAAATGGTACAGACAGTGAGTTTTATAACCCAAAAAAGAAG
ACAGAGAAAGAATACCTTACTTATCTTGCTGGGTTTAGGCAATTAGCACCTAAAGATGCTGTCTTGAATAATTTGGCTTTATCAGATGTGAATTTGCAAG
ACATCATTGCTAATGCTGATAGTGTTACATCAGAAGAGAGGAAAGACGAAAATGGGCAATTGTATTATGACTATGAAATTGATGGAGTAGCTGCACATAG
CTTGATAACTGTTACTTGTGCTAAAAACAAAGCTGTATGCGCATGTTGGTCAATGCGCCCAG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

3-1:1A1-1D12 [6-20-12]//1B11--2.JPG