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Details




NbTI01C03

Phenotype Description
Severely stunted, bushy plants, mottled, crinkled, small top leaves
Annotation
Solyc02g088260.2.1;genomic_reference:SL2.50ch02 gene_region:44988643-44994359 transcript_region:SL2.50ch02:44988643..44994359- functional_description:"Latex abundant protein 1 (AHRD V1 *--- Q6XNP6_HEVBR)"
ref|XP_004232206.1|;PREDICTED: uncharacterized protein At5g39570 [Solanum lycopersicum]
NbS00035899g0008.1;protein AED:0.03 eAED:0.03 QI:0|0|0|0.66|0.5|0.66|3|0|480; (*GB) gi|225452887|ref|XP_002283932.1| (e_value=2e-65) PREDICTED: uncharacterized protein At5g39570 [Vitis vinifera];; (*SWP) sp|Q9FKA5|Y5957_ARATH (e_value=8e-33) Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1;; (*TAIR) AT5G39570.1 (e_value=6e-34) | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:15844021-15845827 FORWARD LENGTH=381;; (*ITAG) Solyc02g088260.2.1 (e_value=1e-120) genomic_reference:SL2.40ch02 gene_region:44988643-44994359 transcript_region:SL2.40ch02:44988643..44994359- functional_description:"Latex abundant protein 1 (AHRD V1 *--- Q6XNP6_HEVBR)";
AT5G39570.1;| Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:15844021-15845827 FORWARD LENGTH=381
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0030435
Sequence
>NbTI01C03
GGATTGGGTTTCAGCCTGGGATGAATCGTCCTGGTGGTGGCTATGGTGGAGAAAGTGAATATGGATCTGGATATGGACGGAAGAGCGAGTATGAAGAACC
CGCTTCCGAATACGGATCCGGGTATGGGAGAAAGAGTGAGTATGAAGAGCCCAAACCGGATTATGGATCTGGGTATGGCCGCAAGAGTGAATATGTAGAG
CCCGTTTCTGAATACGGATCTGGGTATGGGCGAAAGAGTGAGTATGAAGAGCCCAAACCAGAATATGGATCCGGGTATGGGCGAAAGAGCGAATATGAAG
AGCCCACATCAGAATACGGATCTGGATATGGGAGAAAGAGTGAGTACGAAGAACCCGCTCCAGAGTACGGATCGGAATACAGGAGGAAGAGTGAATATGA
GGAGCCAAGCTCGGAATACGGGTCGGGTTATGAGCGTAGGACCGAGTCCGAAGAGTATGGATCTGGTGGATATGGAAGGAAGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1C3.JPG