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Details




NbTI01C04

Phenotype Description
Bushy plants, crinkled leaves, spotted cell death, chlorotic top leaves
Annotation
Solyc10g008560.2.1;genomic_reference:SL2.50ch10 gene_region:2665397-2673702 transcript_region:SL2.50ch10:2665397..2673702- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C1HAJ3_PARBA); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 "
ref|XP_009781135.1|;PREDICTED: UPF0420 protein C16orf58 homolog isoform X2 [Nicotiana sylvestris]
NbS00022345g0020.1;protein AED:0.34 eAED:0.36 QI:0|0.84|0.92|1|0.92|0.92|14|923|373; (*GB) gi|255569810|ref|XP_002525869.1| (e_value=4e-175) conserved hypothetical protein [Ricinus communis];; (*SWP) sp|Q91W34|CP058_MOUSE (e_value=5e-37) UPF0420 protein C16orf58 homolog OS=Mus musculus PE=2 SV=1;; (*TAIR) AT5G49820.1 (e_value=4e-164) | Symbols: RUS6 | Protein of unknown function, DUF647 | chr5:20246753-20249432 REVERSE LENGTH=497;; (*ITAG) Solyc10g008560.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2665397-2673702 transcript_region:SL2.40ch10:2665397..2673702- functional_description:"DUF647 domain-containing protein (AHRD V1 **-- C1HAJ3_PARBA); contains Interpro domain(s) IPR006968 Protein of unknown function DUF647 ";
AT5G49820.1;| Symbols: RUS6 | Protein of unknown function, DUF647 | chr5:20246753-20249432 REVERSE LENGTH=497
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01C04
TCTGGATTTTGTTTTGTGGCAAATGAAGCTAGATAATGATTGTGAAGAGCAAGAACAACTTTTTATGTGATATCAATCATATAGGAGTCAGCAATGGAGA
TGGCTGCTGTGCATTACAGATGAATGACAAATGATGTATAACAGTCAAAGTGATTTGTCGCTATAGGATCAAGATCACGCAATTCATTTTTGGGCAGCTA
TAGGATGGACGACAACCTATAGGCGACATAGTAATACTCAGATTCTGGCCAAACTTCCTCACTGTGCCTGAGCAGGTCTTGGAGCGCATTAGACTCATAC
TATCTCGTAAGTGCATTTTTGCAGCGAATGTCGCCAAGAGTGTAGGTGCTGTCACTTCTACTTCAACTCGTACTCCTATATATGAGGCCTTCGCTAAAGG
GGAAAACATTGGGGATGTAACTGCTAAGGGGGAATGCGTTGGCAATCTTGCTGATTTGGTCGTGACTGAAATAAGTTTACAGTTTGAAAACCAAGATTCA
CACCATAAGTCAAACTTCCATTGCCAAGATAGCTTGTTGAAATGCACGTGTAGATCACTTGATAAATTCATACCTTTGATATTGGCAGAGCTATTGATGG
ACAATCATCTTCATTGAAAATGATTGTTGCAGTCACAGAAATTGGGATAGAGTTACTTGTAGAAATCTCCAACTAGAAGGAAGCTCCTGCACAATTTGAT
GGAAACAGAGGCCATCGTTTTAATATAACAGATAGGTTAGGGGGATGCATGTTATATAAGCTCAACTTGAAAGCAGAACTTTTCTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1A1-1D12 [6-20-12]//1C4--2.JPG