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Details




NbTI01C12

Phenotype Description
Pale green, mottled leaves
Annotation
Solyc12g005270.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch12 gene_region:167632-168204 transcript_region:SL2.50ch12:167632..168204- functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A "
ref|XP_009586861.1|;PREDICTED: histone H2A.6 [Nicotiana tomentosiformis]ref|XP_009597983.1| PREDICTED: histone H2A.6 [Nicotiana tomentosiformis]ref|XP_009803707.1| PREDICTED: histone H2A.6 [Nicotiana sylvestris]ref|XP_009769933.1| PREDICTED: histone H2A.6-like [Nicotiana sylvestris]
NbS00004744g0013.1;protein AED:0.20 eAED:0.20 QI:0|1|1|1|1|1|2|316|133; (*GB) gi|118484619|gb|ABK94182.1| (e_value=3e-58) unknown [Populus trichocarpa];; (*SWP) sp|Q9LHQ5|H2A2_ARATH (e_value=4e-57) Probable histone H2A.2 OS=Arabidopsis thaliana GN=At3g20670 PE=1 SV=1;; (*TAIR) AT3G20670.1 (e_value=3e-58) | Symbols: HTA13 | histone H2A 13 | chr3:7229472-7229963 FORWARD LENGTH=132;; (*ITAG) Solyc12g005270.1.1 (e_value=3e-61) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch12 gene_region:167632-168204 transcript_region:SL2.40ch12:167632..168204- functional_description:"Histone H2A (AHRD V1 ***- D7KGW6_ARALY); contains Interpro domain(s) IPR002119 Histone H2A ";
AT1G51060.1;| Symbols: HTA10 | histone H2A 10 | chr1:18926948-18927443 FORWARD LENGTH=132
GO ID (Nr annotation)
GO:0000786 GO:0005634 GO:0003677 GO:0046982
GO ID (Arabidopsis annotation)
GO:0000786 GO:0005634 GO:0003677 GO:0046982
GO ID (Tomato annotation)
GO:0000786 GO:0005634 GO:0003677 GO:0046982
GO ID (Niben annotation)
GO:0000786 GO:0005634 GO:0003677 GO:0046982
Sequence
>NbTI01C12
CCATTCAAATCTCGTCTCTCTGTACAACAAAATCCAATTAATTCCTCTGTCTGCAGTATAACAACAATCAAATGGCAGGTAGAGGAAAAACCCTAGGATC
TGGAGCAGCAAAGAAGGCTACATCCCGTAGTAGCAAAGCCGGCCTTCAATTCCCCGTCGGTCGTATCGCCCGTTTTCTCAAAGCCGGGAAGTATGCCGAG
CGTGTTGGTGCCGGTGCCCCTGTTTACCTTGCTGCCGTCCTCGAATACCTTGCTGCTGAGGTGCTTGAATTGGCTGGAAATGCTGCGAGGGACAACAAGA
AGACTAGGATAGTACCAAGGCATATACAGTTGGCAGTCAGAAATGATGAGGAATTGAGCAAGTTGCTTGGAGATGTAACTATTGCCAATGGTGGTGTTAT
GCCCAATATTCATAACCTTTTGCTGCCTAAGAAAGCTGCTGGCTCCTCAAAGCCATCTGCTGATGAAGATTAGATTGGAAGGACAATAGGCAGTTTCAAG
TGTTAAGCCTTAAATTTGGATCTGCTGGTGTTTGTTTTTTAGATTCCATAGAAATTATTAGGTTTCTCCAGTATGAAATCAATTGTGTTTTCTTAGTTCT
TTTATAGTGTTAGGGTTATCTTAGCCTATGTATACAAATGAAAGGCCATTTTCATACTTTTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1C12.JPG