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Details




NbTI01D01

Phenotype Description
Chlorotic, mottled, crinkled leaves
Annotation
Solyc04g011510.2.1;genomic_reference:SL2.50ch04 gene_region:3944572-3949105 transcript_region:SL2.50ch04:3944572..3949105+ functional_description:"Triosephosphate isomerase (AHRD V1 **** Q38JI4_SOLTU); contains Interpro domain(s) IPR000652 Triosephosphate isomerase "
ref|XP_009793252.1|;PREDICTED: triosephosphate isomerase, cytosolic isoform X1 [Nicotiana sylvestris]
NbS00011031g0007.1;protein AED:0.24 eAED:0.24 QI:143|1|1|1|0.87|0.77|9|710|254; (*GB) gi|77745458|gb|ABB02628.1| (e_value=2e-161) triose phosphate isomerase cytosolic isoform-like [Solanum tuberosum];; (*SWP) sp|P48495|TPIS_PETHY (e_value=1e-161) Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1;; (*TAIR) AT3G55440.1 (e_value=5e-151) | Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate isomerase | chr3:20553794-20556078 FORWARD LENGTH=254;; (*ITAG) Solyc04g011510.2.1 (e_value=3e-152) genomic_reference:SL2.40ch04 gene_region:3944572-3949105 transcript_region:SL2.40ch04:3944572..3949105+ functional_description:"Triosephosphate isomerase (AHRD V1 **** Q38JI4_SOLTU); contains Interpro domain(s) IPR000652 Triosephosphate isomerase ";
AT3G55440.1;| Symbols: ATCTIMC, TPI, CYTOTPI | triosephosphate isomerase | chr3:20553794-20556078 FORWARD LENGTH=254
GO ID (Nr annotation)
GO:0005737 GO:0004807 GO:0006094 GO:0006096 GO:0006098
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO:0004709 GO:0000165
GO ID (Niben annotation)
Sequence
>NbTI01D01
TTTTTTCTTTCTCTGCAATCCTCGTGAATCCTTTGATATCATCTACATCCAACAATGGGCAGAACTTTCTTTGTCGGCGGCAACTGGAAATGTAATGGAA
CCAGTGAAGAGGTCAAGAAGATAGTATCAACACTCAATGCCGGTCAAGTGCCATCGCAAGATGTTGCTGAGGTTGTTGTGAGCCCTCCATTTGTATTTCT
TCCTCTGGTCAAGAGTGAACTGCGACCTGATTTTCATGTTGCTGCCCAGAATTGTTGGGTTAAGAAAGGGGGTGCTTTCACCGGTGAGGTTAGTGCTGAG
ATGCTTGTTAATCTGAGCATTCCTTGGGTCATTTTGGGTCACTCTGAAAGGAGGGCTATTTTAGGTGAATCAGATGAGTTTGTTGGAGACAAGGTAGCAT
ATGCCATTTCTCAAGGTTTGAAGGTTATTGCATGTGTTGGGGAGACTCTTGAGCAAAGAGAATCAGGATCTACCATTGATGTTGTTGCAGCACAAACAAA
GGCTATTGCAGACCGAGTAAAAGATTGGACAAAAGTGGTTATAGCTTATGAGCCTGTTTGGGCCATTGGAACCGGAAAGGTTGCATCCCCTGCACAAGCC
CAGGAAGTGCATGCTGAATTGAGGAAATGGCTTCAAGTGAATGTTAGTGCTGAAAGTGGCTGCTTCTACCAGGATCATCTATGGAGGATCTGTAAACGGT
GCAAACTGCAAGGAGTTGGCTGGGACAGCCCTGATATTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1D1.JPG