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Details




NbTI01D03

Phenotype Description
Severely stunted plants, chlorotic, mottled, crinkled leaves
Annotation
Solyc01g111080.2.1;genomic_reference:SL2.50ch01 gene_region:89203284-89226964 transcript_region:SL2.50ch01:89203284..89226964- functional_description:"Gibberellin-regulated protein 2 (AHRD V1 *--- B6UGG6_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein "
ref|XP_009799365.1|;PREDICTED: snakin-2 [Nicotiana sylvestris]
NbS00014754g0002.1;protein AED:0.22 eAED:0.22 QI:0|0|0|0.33|1|1|3|0|103; (*GB) gi|224085870|ref|XP_002307720.1| (e_value=5e-41) predicted protein [Populus trichocarpa];; (*SWP) sp|Q93X17|SNAK2_SOLTU (e_value=1e-32) Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1;; (*TAIR) AT1G75750.1 (e_value=4e-30) | Symbols: GASA1 | GAST1 protein homolog 1 | chr1:28441813-28442284 REVERSE LENGTH=98;; (*ITAG) Solyc12g089300.1.1 (e_value=2e-40) evidence_code:10F0H1E0IEG genomic_reference:SL2.40ch12 gene_region:62878510-62879946 transcript_region:SL2.40ch12:62878510..62879946- functional_description:"Gibberellin-regulated protein 2 (AHRD V1 *--- B6TLZ8_MAIZE); contains Interpro domain(s) IPR003854 Gibberellin regulated protein ";
AT2G18420.1;| Symbols: | Gibberellin-regulated family protein | chr2:7993861-7994334 FORWARD LENGTH=94
GO ID (Nr annotation)
GO:0005576 GO:0005618 GO:0016021 GO:0006952
GO ID (Arabidopsis annotation)
GO:0031224 GO:0034358 GO:0043227 GO:0044424 GO:0003676 GO:0004465 GO:0043167 GO:0002376 GO:0006629 GO:0007154 GO:0009749 GO:0030154 GO:0044700 GO:0048522 GO:0048523 GO:0048856 GO:0050863 GO:0051716 GO:1902531
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005634 GO:0005747 GO:0005819 GO:0005886 GO:0044421 GO:0044427 GO:0070013 GO:0004714 GO:0008092 GO:0008392 GO:0008395 GO:0016712 GO:0036041 GO:0097159 GO:1901363 GO:0006468 GO:0007126 GO:0007346 GO:0007423 GO:0007548 GO:0008284 GO:0009790 GO:0009887 GO:0010477 GO:0017144 GO:0019373 GO:0022607 GO:0030154 GO:0031401 GO:0032868 GO:0034097 GO:0042060 GO:0042325 GO:0042493 GO:0043085 GO:0043627 GO:0048008 GO:0048523 GO:0048608 GO:0051234 GO:0051338 GO:0051592 GO:0065008 GO:0071363 GO:0071495 GO:1903047
Sequence
>NbTI01D03
TAGGCCATTTCATAAAACTCTCTTTGTTTCATTAGTTCTCTGCTTGCTTCTCCTCGATGAAGTCCAATCCATTCATACTGATCAAGTGACTAGCAATGCC
ATTTCTGAAGCCGGTTATTCCTACCCGAAAATGGATTGTGGAGGAGCATGTAAAGCAAGGTGCCGTTTATCATCAAGGCCAAGATTGTGCAATAGAGCAT
GTGGAACTTGTTGTGCAAGATGCAACTGTGTGCCTCCTGGCACTTCTGGCAACACTGAAACTTGCCCTTGTTATGCAAATATGACTACCCACGGCAACAG
ACGCAAATGCCCTTAATATATTAATCTTCTTTTGTAAAATCCTCTGCTACTTATTGATTTCTCAGACTATATATAGTGTATGGTCTGCCTGTATTTTATC
AATAAACAAAATATATAGTAAATGTGTTTACTGTACTTATTTTATTTTTTGTCTTTTCTTTTTGAGGAATTGTGTCCTCTCCTCTTTGTGTGTTAATACA
TTTGTAATGCTTTGTATTCTTGTTTTGTATTATATGAGATGTGGAATAAATGAGTTTTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1D3.JPG