Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI01D05

Phenotype Description
Pale green leaves
Annotation
Solyc12g089220.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch12 gene_region:62767870-62771271 transcript_region:SL2.50ch12:62767870..62771271- functional_description:"Wound responsive protein (Fragment) (AHRD V1 *--- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 "
ref|XP_009611758.1|;PREDICTED: bifunctional nuclease 1-like [Nicotiana tomentosiformis]
NbS00024051g0009.1;protein AED:0.28 eAED:0.35 QI:321|0.72|0.5|1|0.90|0.75|12|0|360; (*GB) gi|8096273|dbj|BAA95791.1| (e_value=2e-175) unnamed protein product [Nicotiana tabacum];; (*TAIR) AT1G75380.3 (e_value=4e-117) | Symbols: ATBBD1, BBD1 | bifunctional nuclease in basal defense response 1 | chr1:28281789-28283631 REVERSE LENGTH=325;; (*ITAG) Solyc12g089220.1.1 (e_value=1e-137) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:62767870-62771271 transcript_region:SL2.40ch12:62767870..62771271- functional_description:"Wound responsive protein (Fragment) (AHRD V1 *--- A6N0L4_ORYSI); contains Interpro domain(s) IPR003729 Protein of unknown function DUF151 ";
AT1G75380.3;| Symbols: ATBBD1, BBD1 | bifunctional nuclease in basal defense response 1 | chr1:28281789-28283631 REVERSE LENGTH=325
GO ID (Nr annotation)
GO:0016020 GO:0004518 GO:0090305
GO ID (Arabidopsis annotation)
GO:0005615 GO:0043227 GO:0044424 GO:0000166 GO:0004812 GO:0005179 GO:0031856 GO:0051428 GO:0001501 GO:0006357 GO:0006418 GO:0007267 GO:0045453 GO:0045725 GO:0045935 GO:0046326 GO:2000026
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005737 GO:0001972 GO:0005215 GO:0016918 GO:0019841 GO:0006810 GO:0032501 GO:0034653 GO:0044767
Sequence
>NbTI01D05
TAAACTCTGACTATTCAATACAGTAATTCTCAGAAAACTCGATCATTTCTTGTGGTTGAAGCTATGAATTGATGATCAGAAGCTGTTGATTCTTACAATT
CTGCTGAAGATTAAGAGCTTTCTAGAGAATTTTGTAACTCAGATTTCAAATTAGGTAAAATGAGCTCTCTACAGGGGCCTATTGTTTGCCCTGTGGTTCG
TGGAAAGCGAACAGGTCCTGTCAATTCATCTGTAGTGAAGGCTAAGATGCTGAGGAGTGAGTTCTGGGGATTCAATGGGTTATCTAGCCGGGTGGCTCGT
CTACCACGATCGCGCGTAAGAAAGTTGATCGGTTGCAGTTTCAGTTCATCATCAAATGGCAATGGTAGCATGGCTCAGAATTTTAATGAAAGTGATGCTG
ATTATGTGAATTCTAGCGTGGTTGAAGCTGTTGAAGTGCGAAGTGGGAAAGACGGTTTCGTGATCAAGATGAGAGATGGCAGACATTTGAAATGCGTCCC
CAGCAATCCACAATGCGGTCATATACCTGATTATGCTCCACAACCAGCGATTGTGCTAAGAATGGAGGATGGAACTGGGCTGCTTCTTGCTATAATTGTT
TTGCAGATGCCAAGTGTGCTGCTCATGGCAGCTGTACGCAATGTCCAACTTGTACAAATAGTCGCTCCATTTCAGGCCAGACCAACAATGTATCAAGTTT
TGAAGGAAATGGTTGAGAAGATGGGTTATGCAGTTAAACTTGTTCGAGTTACCAAGAGAGTGCACGAGGCATATTTTGCCCAGTTATACCTAACCAGGTT
GGACAATGATGCTGAGAGTATTAGCTTTGATCTTCGTCCTTCTGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1D5.JPG