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Details




NbTI01D06

Phenotype Description
Severely stunted, Yellow white leaves, spotted cell death
Annotation
Solyc11g012890.1.1;evidence_code:10F0H0E1IEG genomic_reference:SL2.50ch11 gene_region:5667348-5673104 transcript_region:SL2.50ch11:5667348..5673104- functional_description:"Unknown Protein (AHRD V1)"
ref|XP_009778548.1|;PREDICTED: uncharacterized protein LOC104227879 [Nicotiana sylvestris]
NbS00036767g0003.1;protein AED:0.00 eAED:0.00 QI:0|1|0.5|1|1|1|2|366|116; (*TAIR) AT1G48200.1 (e_value=3e-19) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17797070-17797852 REVERSE LENGTH=118;; (*ITAG) Solyc11g012890.1.1 (e_value=4e-47) evidence_code:10F0H0E1IEG genomic_reference:SL2.40ch11 gene_region:5667348-5673104 transcript_region:SL2.40ch11:5667348..5673104- functional_description:"Unknown Protein (AHRD V1)";
AT1G48200.1;| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17797070-17797852 REVERSE LENGTH=118
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO:0044428 GO:0005488 GO:0016757 GO:0006281 GO:0016070 GO:0034645 GO:0050789
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01D06
ACTGTAAATTTTGGGTACCAACCAGTTCCTGGAGCAAATAGACAGAGAGTCGAAGTCAGGGAGATGGAGTGGACAAGCAAAGTCGGGGAGGCAGTGAACA
AGGCGGTAAACAGCAACAAAGTGTTAAACGTAGTGCTATTGGGTGCATTTGGGTTTCTCTGCCTGAGATCCGTGCAGCAACAGAGGAACATCCAAGTTCT
GGAGACAGAAAAGGACTCTTTGCTCAATTCTAATAAAGCTATGAAGAAGGCCATGTGGGATTGGAAGCAGCAGCTTTTCGCCGAAGCTGATTTACCCAAC
CCCATTCTTCCTCTCTCCAAGCTTAAATCCATCTACGGAGAAGCCCCAACTTCTTCTGGTGGAGATACTCAAAAAGGAGATGGAAAATCACGTGCATCAG
CATTTGTTGTCTAGAAAGCCATTGGTATAGCTTGTTTATGAAGAAACAAGCTTTCTGGAAAAATAACAATGAGCTTCTTAGATCTGTGAAATATCACGCT
TCAGTTAGTATAATGGAAGCTGATCGCAAAGGGGGAATACGGTGTAATACTGAGTTTTTGTTTCGTCCTGTTTCTAAGAACTTTGTGATTTTACAACTGT
TTTTCCCTCTTCTCTAACATGCAGAGTGTAAGGAGGCTGAGGTCCAAGTTTAGTTTGTGGTATTATAGTGATGCTTCATTTTTCTACTCCATTTTCTTTT
TCTTGGGACTGTGCCATGACCTGAATTTCTGATAATTGAATTTCATTATTGATCAGCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1D6.JPG