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Details




NbTI01D09

Phenotype Description
Stunted plants, green white, mottled, crinkled leaves
Annotation
Solyc03g118650.2.1;genomic_reference:SL2.50ch03 gene_region:61575132-61577276 transcript_region:SL2.50ch03:61575132..61577276+ functional_description:"Aldose 1-epimerase-like protein (AHRD V1 **** Q9LVH6_ARATH); contains Interpro domain(s) IPR015443 Aldose-1-epimerase "
ref|XP_009766422.1|;PREDICTED: aldose 1-epimerase [Nicotiana sylvestris]
NbS00041476g0013.1;protein AED:0.33 eAED:0.33 QI:0|0.6|0.5|1|0.2|0.33|6|0|353; (*GB) gi|224118626|ref|XP_002317867.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q66HG4|GALM_RAT (e_value=1e-85) Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1;; (*TAIR) AT3G17940.1 (e_value=2e-176) | Symbols: | Galactose mutarotase-like superfamily protein | chr3:6143707-6145244 REVERSE LENGTH=341;; (*ITAG) Solyc03g118650.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:61575132-61577276 transcript_region:SL2.40ch03:61575132..61577276+ functional_description:"Aldose 1-epimerase-like protein (AHRD V1 **** Q9LVH6_ARATH); contains Interpro domain(s) IPR015443 Aldose-1-epimerase ";
AT3G17940.1;| Symbols: | Galactose mutarotase-like superfamily protein | chr3:6143707-6145244 REVERSE LENGTH=341
GO ID (Nr annotation)
GO:0016853 GO:0030246 GO:0005975
GO ID (Arabidopsis annotation)
GO:0016853 GO:0030246 GO:0005975
GO ID (Tomato annotation)
GO:0016853 GO:0030246 GO:0005975
GO ID (Niben annotation)
GO:0016853 GO:0030246 GO:0005975
Sequence
>NbTI01D09
TTAATCTTTACGCTAATGGCAGAACCCAAAATCTTCGAACTCAATAATGGAAGCATGCAAGTCAAAGTCTCCAATTTGGGTTGTACCATTCTCTCCTTGT
CTGTACCTGATAAAGATGGGAATTTGGGTGATGTGGTTCTTGGATTTGATACCCTCGAGCCATACCAGAAAGGTTTAGCCCCATTCTTTGGCTGCATTGT
GGGTCGAGTGGCGAATAGGATTAAAGAGGGAAAGTTCTCTCTTAATGGAGTTGATTACACTTTACCCATCAATAAGCCACCAAACAGCCTCCATGGTGGG
CACAAGGGTTATGACAAGGTTGTGTGGGAGGTTGCTGAACACAAGGAGGGCGAACATCCATCAATTACTTTTAAGTATCATAGTCGTGATGGAGAAGAAG
GCTACCCAGGAGATCTTTCTGTGACCGCAACTTACACACTTACCTCTAAGACGACACTCAGACTTGATATGGAAGCTGTGCCCGCAGATAAGCCTACTCC
TGTTAGTTTAGCACAGCACACCTATTGGAACCTTGGTGGCCATAATTCCGGGGATATTCTTGATAACACATCCCAGATATGGGCAAATCATATTACTCCT
GTTGATCAGAACATAAATCCCAACCGGAGAAATAATGCCTGTGAAAGGCACTCCATTTGATTTCACTGCTGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1A1-1D12 [6-20-12]//1D9.JPG