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Details




NbTI01D10

Phenotype Description
Pale green leaves
Annotation
Solyc03g111730.2.1;genomic_reference:SL2.50ch03 gene_region:56432592-56434422 transcript_region:SL2.50ch03:56432592..56434422- functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain "
ref|XP_009779832.1|;PREDICTED: vignain-like [Nicotiana sylvestris]
NbS00032670g0016.1;protein AED:0.03 eAED:0.03 QI:345|1|1|1|1|1|4|175|361; (*GB) gi|172052260|gb|ACB70409.1| (e_value=0.0) cysteine protease [Nicotiana tabacum];; (*SWP) sp|O65039|CYSEP_RICCO (e_value=0.0) Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1;; (*TAIR) AT5G50260.1 (e_value=7e-173) | Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361;; (*ITAG) Solyc03g111730.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:56432592-56434422 transcript_region:SL2.40ch03:56432592..56434422- functional_description:"Cathepsin B-like cysteine proteinase (AHRD V1 **-* CYSP_SCHMA); contains Interpro domain(s) IPR013128 Peptidase C1A, papain ";
AT5G50260.1;| Symbols: | Cysteine proteinases superfamily protein | chr5:20455605-20456862 FORWARD LENGTH=361
GO ID (Nr annotation)
GO:0008234 GO:0006508
GO ID (Arabidopsis annotation)
GO:0008234 GO:0006508
GO ID (Tomato annotation)
GO:0008234 GO:0006508
GO ID (Niben annotation)
GO:0008234 GO:0006508
Sequence
>NbTI01D10
CTATCCATACATGGCTGAAGATGGCGAGTGTGACATTCAAAAGAGAAATTCTCCCGTGGTATCAATTGACGGACATGAGGATGTTCCGCCTAATGATGAG
GGTTCCCTACTTAAAGCAGTAGCCAACCAGCCTGTTTCTGTAGCTATACAAGCTTCAGGTTCTGACTTCCAGTTCTACTCTGAGGGCGTATTCACTGGAG
ACTGTGGTACTGAGTTGGATCATGGTGTGGCAATTGTGGGCTATGGCACAACTCTTGATGGAACCAAATACTGGATTGTGAAGAACTCGTGGGGACCTGA
ATGGGGAGAAAAAGGATACATTAGGATGCAACGCGAGATTGATGCTGAAGAGGGATTGTGTGGTATAGCAATGCAACCATCTTATCCCATCAAGACTTCA
TCAAGCAACCCCACAGGGTCTCCTGCAACAACACCTAAGGATGAACTCTAAGTTACATATTATCCACTTAGCCTCATTTAGTGTCTGTTTTAGTCTCTGT
GCAAGTAATATGCAACTCATAAGAATGTGTAAAATAAGATGCATTTAGTTTCATGGTCTCGATTTATAACGTTCTGTAAACTGCATTGGAATATGATATA
ATGAACAATTTCGTTTCTGCG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1D10.JPG