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Details




NbTI01D12

Phenotype Description
Pale green leaves
Annotation
Solyc06g060340.2.1;genomic_reference:SL2.50ch06 gene_region:34712220-34715366 transcript_region:SL2.50ch06:34712220..34715366+ functional_description:"Chloroplast photosystem II-associated protein (AHRD V1 ***- A8HPM2_CHLRE); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein "
gb|ABC59516.1|;chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]gb|ACC95540.1| chloroplast photosystem II 22 kDa component [Nicotiana benthamiana]
NbS00035687g0007.1;protein AED:0.23 eAED:0.23 QI:300|1|0.75|1|1|1|4|0|274; (*GB) gi|84620802|gb|ABC59515.1| (e_value=9e-120) chloroplast photosystem II 22 kDa component [Nicotiana benthamiana];; (*SWP) sp|Q9SMB4|PSBS_TOBAC (e_value=2e-118) Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1;; (*TAIR) AT1G44575.1 (e_value=1e-92) | Symbols: NPQ4, PSBS | Chlorophyll A-B binding family protein | chr1:16871768-16873194 FORWARD LENGTH=265;; (*ITAG) Solyc06g060340.2.1 (e_value=1e-94) genomic_reference:SL2.40ch06 gene_region:34712220-34715366 transcript_region:SL2.40ch06:34712220..34715366+ functional_description:"Chloroplast photosystem II-associated protein (AHRD V1 ***- A8HPM2_CHLRE); contains Interpro domain(s) IPR001344 Chlorophyll A-B binding protein ";
AT1G44575.1;| Symbols: NPQ4, PSBS | Chlorophyll A-B binding family protein | chr1:16871768-16873194 FORWARD LENGTH=265
GO ID (Nr annotation)
GO:0009536 GO:0009579 GO:0016021
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01D12
TACTTCTTCTTCTTCTTCTAACTTAGGGAATTTAAGTTCTCAAGAGCAAAAAGAAAAAGACATGGCTCAAACAATGCTGCTGACAGCCAATGCCAAAGTT
GATTTAAGGAGTAAAGAATCCTTAGTTGAAAGACTAAAGCCTAAGCCTTTGTCTTCTTTCTTTTTGCCTTCTCTTTCTTTGAAATACCCTTCTGCTTCTT
CTTCTTCTTCTTCTTCTTCTTCACATTTCACAAGTACAACTGTTGCTCTTTTCAAGTCTAAAGCCAAAGCTCCTGCCAAAAAGGTTGTACCAAAGCCAAA
GGAAAAAGTTGAGGATGGGATTTTTGGAACCTCAGGAGGAATTGGTTTCACTAAGCAAAATGAGCTCTTTGTTGGCCGTGTTGCTATGATTGGTTTTGCG
GCATCTTTGTTGGGAGAAGCAATAACAGGAAAGGGAATATTGGCACAACTGAATCTTGAAACTGGAATTCCAATCTATGAAGCAGAGCCACTACTATTGT
TCTTCATCTTATTCAATCTGCTTGGAGCCATTGGAGCTTTGGGAGACAGAGGAAAATTTATTGATGACCCTACCCCTCCTACTGGTCTTGATAAGGCTGT
TATCCCTCCTGGCAAAGGCTTTAAATCTGCTTTGGGACTTAGCGAAGGAGGTCCTCTATTTGGATTCACAAAGGCAAATGAGCTGTTTGTAGGAAGATTG
GCACAACTGGGAATTGCTTTCTCCATTATAGGAGAAATTATTACAGGGAAAGGGAGCTTTGGCACAACTTAACTTTGAGACAGGTGTCCCAATCAATGAG
ATTGAGCCCCTTTTGTTGTTTAACATTGTCTTCTTCTTCGTTGCTGCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1A1-1D12 [6-20-12]//1D12.JPG