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Details




NbTI01E01

Phenotype Description
Moderately stunted plants
Annotation
Solyc09g065600.2.1;genomic_reference:SL2.50ch09 gene_region:59349686-59357196 transcript_region:SL2.50ch09:59349686..59357196- functional_description:"Sugar nucleotide transporter-like protein (Fragment) (AHRD V1 *--- A8J1R9_CHLRE)"
ref|XP_009762530.1|;PREDICTED: GDP-mannose transporter GONST4 [Nicotiana sylvestris]ref|XP_009762531.1| PREDICTED: GDP-mannose transporter GONST4 [Nicotiana sylvestris]
NbC25401240g0002.1;protein AED:0.06 eAED:0.15 QI:0|-1|0|1|-1|1|1|0|85; (*SWP) sp|Q84L08|GONS4_ARATH (e_value=3e-34) GDP-mannose transporter GONST4 OS=Arabidopsis thaliana GN=GONST4 PE=2 SV=1;; (*TAIR) AT5G19980.1 (e_value=2e-35) | Symbols: GONST4 | golgi nucleotide sugar transporter 4 | chr5:6749907-6750932 REVERSE LENGTH=341;; (*ITAG) Solyc09g065600.2.1 (e_value=3e-22) genomic_reference:SL2.40ch09 gene_region:59349686-59357196 transcript_region:SL2.40ch09:59349686..59357196- functional_description:"Sugar nucleotide transporter-like protein (Fragment) (AHRD V1 *--- A8J1R9_CHLRE)";
AT5G19980.1;| Symbols: GONST4 | golgi nucleotide sugar transporter 4 | chr5:6749907-6750932 REVERSE LENGTH=341
GO ID (Nr annotation)
GO:0005794 GO:0015780
GO ID (Arabidopsis annotation)
GO:0005794 GO:0015780
GO ID (Tomato annotation)
GO:0005794 GO:0015780
GO ID (Niben annotation)
GO:0005794 GO:0015780
Sequence
>NbTI01E01
GCTCTCAAACTCTCTTAAAGTTTCCCGAAACCTAGCCGCCTCTCACCATCTCCAGCTCGAAACCCGCCGAGATCCATGGCTTCCTAGGCCATGAGAGTCT
TATACCCAGCTTCTCTTGCTCTCACGCGCATGATACCTAAAGATTTGAGGCCTGACTATGAAGGGTCAAACCCAGACCTCTATCGATTCGAGGTTCAAGA
TCATCTCCGGCCTTGCTGGCGTACCAAGGTTGTCTGAGCCTGTTTCTCACCTCTCCGACTAAGATCAGTGGTCTTTCAAAGTCTTTCTCATTTATAGGGT
TCTTTTGAAACCCTAACCCTTCGAGCTCAACTTTGGGCGTTTATTCTATTGCTTATATGCAAGCACTGTATTGAGGTCCAGGCGAGAATAAAGCCCTTTA
ACAGCTCTTGTGAATACAATGTCTGCAATCAGATTTGATGCGTCAAAGCAATATTATGCTACCAGCAGTCTTGTGGTTGGATATGCCCTCTGTTCCAGCT
TGCTTGCTGTGATTAACAAGTTTGCTATAACAAACTTCAACTACCCAGGTCTTCTTACTACATTGCAAATACCTAACTTCAGCTTTAGGGGGTTTGGGGT
TTTAGGAAAATTTGGGGCTGTTGCATCATGATCCGTTTACGTTTGGAGAATGCCAAGAAATTTCTTTGCCTGGCTGCCCTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1E1.JPG