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Details




NbTI01E02

Phenotype Description
Moderately stunted plants, pale green, mottled leaves
Annotation
Solyc06g007440.2.1;genomic_reference:SL2.50ch06 gene_region:1453365-1455690 transcript_region:SL2.50ch06:1453365..1455690- functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase "
ref|XP_009781175.1|;PREDICTED: CBL-interacting serine/threonine-protein kinase 11-like [Nicotiana sylvestris]
NbS00018658g0003.1;protein AED:0.10 eAED:0.10 QI:0|1|0.5|1|1|1|2|0|441; (*GB) gi|30013673|gb|AAP03879.1| (e_value=2e-175) Avr9/Cf-9 rapidly elicited protein 216 [Nicotiana tabacum];; (*SWP) sp|O22932|CIPKB_ARATH (e_value=9e-161) CBL-interacting serine/threonine-protein kinase 11 OS=Arabidopsis thaliana GN=CIPK11 PE=1 SV=1;; (*TAIR) AT2G30360.1 (e_value=7e-162) | Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435;; (*ITAG) Solyc06g007440.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:1453365-1455690 transcript_region:SL2.40ch06:1453365..1455690- functional_description:"CBL-interacting protein kinase 16 (AHRD V1 **** A0MNK3_POPTR); contains Interpro domain(s) IPR002290 Serine/threonine protein kinase ";
AT2G30360.1;| Symbols: CIPK11, PKS5, SIP4, SNRK3.22 | SOS3-interacting protein 4 | chr2:12937265-12938572 REVERSE LENGTH=435
GO ID (Nr annotation)
GO:0004674 GO:0005524 GO:0006468 GO:0007165 GO:0009268
GO ID (Arabidopsis annotation)
GO:0005743 GO:0003677 GO:0003735 GO:0004386 GO:0005524 GO:0006412 GO:0006810
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005576 GO:0005694 GO:0005887 GO:0004345 GO:0004993 GO:0005509 GO:0016162 GO:0030248 GO:0050661 GO:0051378 GO:0006006 GO:0006098 GO:0007193 GO:0007210 GO:0007268 GO:0009414 GO:0009636 GO:0009733 GO:0010104 GO:0014827 GO:0030245 GO:0040012 GO:0042310 GO:0050795 GO:0055114
Sequence
>NbTI01E02
TTTCGCAGAACTCTTAACAAACTCCTAATTGCTCTATCGCTCCTTTACTCCATTCTCATCGTCTAGTAATCAAAATTCATCTGGTTCGATCTCGGACATT
TTAATTTTCGAGATCGAGCATTTTCTTGGCTCTGCCGGCGATTAGGTGCCGGCAATGGCCTTTGCCTCTTCAGAAACCACATTATTCGGCAAATACGAGC
TTGGAAAACTCCTCGGATGTGGCGCATTTGCCAAAGTGTACCACGCTAGGGACATCAAAGATGGCCGAAGCGTGGCGATTAAAATCATCAACAAGACAAG
AATTAATACCAATCCCGCGCTGAAGTCCAACATCAAGCGCGAGATCTCAATCATGCGGCGTCTACGACACCCGCACATTGTCAAACTCGATGAAGTATTG
GCGACCAAGACGAAGATCTACTTCGTCATGGAATTCGTTAAGGGCGGCGAATTGTTCGCGAAAATCGCCAAGGATGGAAAATTCAGCGAGGAAAAAAGCC
GGAAAATTTTCCAGCAACTCATCTACGCCGTCCGTTACTGCCATTCACGCGGCGTCTACCACCGTGATTTGAAACCTGAAAACTTATTGATTGATGAAAA
TGGTGATTTGAAAGTGTCCGATTTTGGACTCAGTGCGTTAACGGAACAAGTTCAACAAGATGGGTTGTTGCACACGCTTTGTGGGACCCCTTCCTACGTG
GCACCAGATATTCTAACAAAGAAAGGATATGATGGAGCTAAGGTAGACATATGGACATGTGGAATCATCTTTGTTTGTATTGAATGCTGGATATTGCCAT
TTCATGATACAAATCTCATGGGGGATGTACCAAAA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1E2..JPG