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Details




NbTI01F01

Phenotype Description
Stunted, bushy plants, mottled leaves
Annotation
Solyc03g007470.2.1;genomic_reference:SL2.50ch03 gene_region:2043582-2047562 transcript_region:SL2.50ch03:2043582..2047562- functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 "
ref|XP_012470499.1|;PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Gossypium raimondii]ref|XP_012470500.1| PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Gossypium raimondii]gb|KHG06870.1| Ubiquitin-conjugating enzyme E2-17 kDa [Gossypium arboreum]gb|KJB19042.1| hypothetical protein B456_003G082500 [Gossypium raimondii]gb|KJB19044.1| hypothetical protein B456_003G082500 [Gossypium raimondii]gb|KJB19045.1| hypothetical protein B456_003G082500 [Gossypium raimondii]
NbS00017824g0009.1;protein AED:0.25 eAED:0.25 QI:175|1|0.8|1|0.75|0.6|5|673|148; (*GB) gi|351726353|ref|NP_001235332.1| (e_value=6e-106) uncharacterized protein LOC100305945 [Glycine max];; (*SWP) sp|P35135|UBC4_SOLLC (e_value=1e-105) Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1;; (*TAIR) AT5G53300.4 (e_value=2e-106) | Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148;; (*ITAG) Solyc03g007470.2.1 (e_value=3e-107) genomic_reference:SL2.40ch03 gene_region:2043582-2047562 transcript_region:SL2.40ch03:2043582..2047562- functional_description:"Ubiquitin-conjugating enzyme E2 10 (AHRD V1 **** UBC10_ARATH); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 ";
AT5G53300.4;| Symbols: UBC10 | ubiquitin-conjugating enzyme 10 | chr5:21632802-21633989 REVERSE LENGTH=148
GO ID (Nr annotation)
GO:0005524 GO:0016874 GO:0008152
GO ID (Arabidopsis annotation)
GO:0005578 GO:0005634 GO:0005739 GO:0005790 GO:0005829 GO:0008021 GO:0009898 GO:0030425 GO:0033162 GO:0033178 GO:0043195 GO:0043204 GO:0070062 GO:0072562 GO:0000166 GO:0003724 GO:0004511 GO:0004869 GO:0004871 GO:0008198 GO:0008199 GO:0016597 GO:0016820 GO:0019825 GO:0019899 GO:0019904 GO:0030246 GO:0034617 GO:0035240 GO:0044822 GO:0001666 GO:0001963 GO:0001975 GO:0002317 GO:0006585 GO:0006631 GO:0006665 GO:0006915 GO:0006954 GO:0007165 GO:0007204 GO:0007507 GO:0007596 GO:0007601 GO:0007605 GO:0007612 GO:0007613 GO:0007617 GO:0007626 GO:0008016 GO:0009414 GO:0009416 GO:0009635 GO:0009651 GO:0010043 GO:0010259 GO:0010951 GO:0014823 GO:0015842 GO:0015992 GO:0016070 GO:0016137 GO:0018963 GO:0021987 GO:0030195 GO:0031295 GO:0031667 GO:0032355 GO:0032496 GO:0033076 GO:0035176 GO:0035690 GO:0035900 GO:0035902 GO:0042136 GO:0042214 GO:0042311 GO:0042418 GO:0042421 GO:0042462 GO:0042745 GO:0042755 GO:0043123 GO:0043434 GO:0045445 GO:0045471 GO:0045472 GO:0046598 GO:0046684 GO:0048596 GO:0051289 GO:0051412 GO:0051602 GO:0052314 GO:0055114 GO:0071287 GO:0071316 GO:0071333 GO:0071363
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005578 GO:0005635 GO:0042470 GO:0003924 GO:0004222 GO:0005509 GO:0005525 GO:0008270 GO:0000054 GO:0006508 GO:0006606 GO:0007067 GO:0007264 GO:0030574 GO:0051301
Sequence
>NbTI01F01
TCTCCAGAAAGATCCTCCTACCTCTTGCAGCGCTGGCCCAGTTGCTGAAGACATGTTTCATTGGCAAGCAACAATTATGGGTCCACCTGACAGCCCTTAT
GCTGGCGGAGTGTTTCTTGTTACCATTCATTTTCCACCTGACTATCCATTTAAGCCACCGAAGGTAGCTTTCAGGACAAAGGTTTTCCACCCAAACATCA
ACAGCAATGGTAGCATTTGCCTCGACATTTTGAAGGAACAGTGGAGCCCGGCACTTGCAATCTCCAAGGTATTGCTGTCAATCTGTTCTCTGTTAACAGA
CCCTAATCCTGATGATCCGTTGGTGCCGGAGATTGCTCATATGTACAAGACTGATAAAAGCAAGTACGAAACAACCGCCCGGAGCTGGACTCAAAAGTAT
GCCATGGGTTAGTTGCTGCGACCATCTCTGGAGGGGCTCCTTTTCTTCTGTGGTATTCTATATTTTCTATTATGTACTAAGAAATGGTGTTCTTGTGCAT
AATCAACTCAAGGGGAAAGGTTGAACAGGCCCCTCTTGTAACAATTTGATTTGCTGTTTGTTTGCAAGAATCTAATGGTTTTGAAACTGTATGATGGGTT
CAATTTATGCGTCTTGACCCTTTTCATCTGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1F1.JPG