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Details




NbTI01F07

Phenotype Description
Stunted plans, mottled, crinkled, small top, chlorotic leaves
Annotation
Solyc09g008650.2.1;genomic_reference:SL2.50ch09 gene_region:2103668-2112469 transcript_region:SL2.50ch09:2103668..2112469- functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B8HUH5_CYAP4); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type "
ref|XP_009789813.1|;PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic [Nicotiana sylvestris]
NbS00032296g0011.1;protein AED:0.37 eAED:0.37 QI:211|1|1|1|0.88|0.9|10|800|233; (*GB) gi|225441076|ref|XP_002264435.1| (e_value=2e-112) PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic isoform 1 [Vitis vinifera];; (*SWP) sp|Q9SR70|FK164_ARATH (e_value=3e-104) Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1;; (*TAIR) AT3G10060.1 (e_value=2e-105) | Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:3102291-3103801 FORWARD LENGTH=230;; (*ITAG) Solyc09g008650.2.1 (e_value=1e-149) genomic_reference:SL2.40ch09 gene_region:2103668-2112469 transcript_region:SL2.40ch09:2103668..2112469- functional_description:"Peptidyl-prolyl cis-trans isomerase (AHRD V1 ***- B8HUH5_CYAP4); contains Interpro domain(s) IPR001179 Peptidyl-prolyl cis-trans isomerase, FKBP-type ";
AT3G10060.1;| Symbols: | FKBP-like peptidyl-prolyl cis-trans isomerase family protein | chr3:3102291-3103801 FORWARD LENGTH=230
GO ID (Nr annotation)
GO:0006457
GO ID (Arabidopsis annotation)
GO:0006457
GO ID (Tomato annotation)
GO:0006457
GO ID (Niben annotation)
GO:0006457
Sequence
>NbTI01F07
AATACCAGTATGAACCATAACTAATTTTGTTCCTACTTCCTGAACTGTCAACACTCTTTTGCTCTTCAATGGATCTTCTCCTCTACCATCCTCTCAAATC
CACCCCTTTTCTCCACTCTCTCCCTTCCATTTCCATCTCAAGAAACAGACCCTTTTCCACAAACTGGATTAGAACAGCTTTACCTTGTGTTTGCTCTTCA
AAATCATCATCTTTGGATGCTCCACTCAAAATACTTTCTTCTCAGAATGAAGGAAGAAGGGCAATAATGGGCTCTCTTCTTATGGCTGCTGCTGCTCTTT
GTGTTTGTAATGTGGCTGAAGCTGCTAGCACAAGCAGAAGAGCTCTTAGGGGAGCAAAAATACCAGAGAGTGAATACACAACCCTTCCAAATGGTCTAAA
GTATTATGACTTGAAAGTCGGCAATGGAGCTGAAGCCGTGAAGGGATCTAGAGTTGCAGTTCACTATGTTGCTAAATGGAGGAACATCACATTCATGACA
AGTAGACAAGGAATGGGAGTTGGTGGTGGAACACCTTATGGATTTGACGTTGGTCAGTCAGAGAGGGGAACAGTCCTTAAAGGATTAGATCTCGGTGTTC
AAGGGATGCGAGTAGGAGGACAGCATCTGCTCATAGTTCCTCCAGAACTAGCTTATGGGAAAGAGGGGGTGCAGGAAATTCCTCCAAATGCAACAATTGA
GATTGATATTGAACTGCTTTCTATTAAACAAAGCCCATTCGGAACTGCTGTAAAAGTTGTTGAAGGATAATCACTATACTCATGTTATATTGATTTGTCG
CGTGCAGAAGTGCACAACCATTGTATAAATTTTGAGAATACTTAGAGATCTGCTCCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1F7..JPG