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Details




NbTI01F09

Phenotype Description
Moderately stunted, bushy plants, pale green young leaves
Annotation
Solyc08g079110.2.1;genomic_reference:SL2.50ch08 gene_region:59918803-59923661 transcript_region:SL2.50ch08:59918803..59923661+ functional_description:"Pentapeptide repeat (AHRD V1 *-*- Q4C7L8_CROWT); contains Interpro domain(s) IPR001646 Pentapeptide repeat "
ref|XP_009804647.1|;PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic [Nicotiana sylvestris]
NbS00016107g0009.1;protein AED:0.16 eAED:0.16 QI:155|1|0.66|1|1|0.66|3|0|150; (*GB) gi|297741150|emb|CBI31881.3| (e_value=4e-59) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q8H1Q1|TL225_ARATH (e_value=2e-45) Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis thaliana GN=At1g12250 PE=1 SV=1;; (*TAIR) AT1G12250.2 (e_value=3e-49) | Symbols: | Pentapeptide repeat-containing protein | chr1:4159623-4161269 FORWARD LENGTH=206;; (*ITAG) Solyc08g079110.2.1 (e_value=2e-73) genomic_reference:SL2.40ch08 gene_region:59918803-59923661 transcript_region:SL2.40ch08:59918803..59923661+ functional_description:"Pentapeptide repeat (AHRD V1 *-*- Q4C7L8_CROWT); contains Interpro domain(s) IPR001646 Pentapeptide repeat ";
AT1G12250.1;| Symbols: | Pentapeptide repeat-containing protein | chr1:4159287-4161269 FORWARD LENGTH=280
GO ID (Nr annotation)
GO:0009535
GO ID (Arabidopsis annotation)
GO:0001891 GO:0005615 GO:0005887 GO:0009897 GO:0045121 GO:0055037 GO:0002020 GO:0005125 GO:0005164 GO:0042802 GO:0044212 GO:0000060 GO:0000122 GO:0000185 GO:0000187 GO:0002439 GO:0002532 GO:0002740 GO:0002876 GO:0002925 GO:0006006 GO:0006919 GO:0006927 GO:0006959 GO:0007254 GO:0008630 GO:0009615 GO:0010693 GO:0010756 GO:0030198 GO:0030316 GO:0030730 GO:0030866 GO:0031622 GO:0031663 GO:0032715 GO:0032729 GO:0032755 GO:0032800 GO:0033138 GO:0034116 GO:0035509 GO:0042346 GO:0043242 GO:0043243 GO:0043491 GO:0043507 GO:0044130 GO:0045071 GO:0045080 GO:0045416 GO:0045429 GO:0045662 GO:0045668 GO:0045672 GO:0045944 GO:0045994 GO:0046325 GO:0048566 GO:0048661 GO:0050715 GO:0050766 GO:0050796 GO:0050830 GO:0050901 GO:0050995 GO:0051023 GO:0051044 GO:0051092 GO:0051384 GO:0051533 GO:0051798 GO:0051897 GO:0060559 GO:0060664 GO:0060693 GO:0061048 GO:0071230 GO:0071316 GO:0071803 GO:0090002 GO:0090208 GO:0097191 GO:0097527 GO:1901224 GO:1903140 GO:1903347 GO:1903488 GO:2000010 GO:2000252 GO:2000343 GO:2001240
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01F09
AAAATCAATCAAGATTGTCTGTCAAATGGAAAGGTCAAATAATAGAGAAGTAAAGAAGTGGAAAACCATTGTTTCAACTGCATTAGCAGCTGCAGTGATT
ACATTTAGCTCAAACATGACTGCTATGGCTGACTTGAATAAGTTTGAGGCAGAAACAAGAGGTGAATTTGGTATTGGTTCTGCTGCTCAATTTGGTTCTG
CTGATCTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1F9.JPG