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Details




NbTI01F10

Phenotype Description
Severely stunted plants, complete yellow, mottled, leaves
Annotation
Solyc02g065400.2.1;genomic_reference:SL2.50ch02 gene_region:31151784-31154764 transcript_region:SL2.50ch02:31151784..31154764+ functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO "
gb|AFH57997.1|;chloroplast PsbO1 precursor [Nicotiana benthamiana]
NbS00032545g0003.1;protein AED:0.18 eAED:0.18 QI:0|1|0.5|1|1|1|2|0|332; (*GB) gi|384038813|gb|AFH57997.1| (e_value=0.0) chloroplast PsbO1 precursor [Nicotiana benthamiana];; (*SWP) sp|Q40459|PSBO_TOBAC (e_value=0.0) Oxygen-evolving enhancer protein 1, chloroplastic OS=Nicotiana tabacum GN=PSBO PE=2 SV=1;; (*TAIR) AT3G50820.1 (e_value=0.0) | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331;; (*ITAG) Solyc02g065400.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31151784-31154764 transcript_region:SL2.40ch02:31151784..31154764+ functional_description:"Oxygen-evolving enhancer protein 1 of photosystem II (AHRD V1 ***- A8J0E4_CHLRE); contains Interpro domain(s) IPR002628 Photosystem II manganese-stabilizing protein PsbO ";
AT3G50820.1;| Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18891008-18892311 REVERSE LENGTH=331
GO ID (Nr annotation)
GO:0009654 GO:0016021 GO:0019898 GO:0005509 GO:0042549
GO ID (Arabidopsis annotation)
GO:0009654 GO:0016021 GO:0019898 GO:0005509 GO:0042549
GO ID (Tomato annotation)
GO:0009654 GO:0016021 GO:0019898 GO:0005509 GO:0042549
GO ID (Niben annotation)
GO:0009654 GO:0016021 GO:0019898 GO:0005509 GO:0042549
Sequence
>NbTI01F10
CCACTTCCTAAAAAGCAGAAACAGAGAGGAGAAGAAGACTTTGATCAAGAAAAGGGTAAAATTATGGCTGTCTCTTTACAAGCAGCTGCTACTCTTATGC
AACCAACAAAGGTTGGTGTTGCCCCAGCTAGAAACAACCTGCAGTTGAGGTCTGCTCAAAGTGTGTGCAAAGCATTTGGTGTTGAACCAGCTGCAGCTAG
GCTTACTTGCTCTTTGCAAACTGAACTCAAGGACTTGGCTCAAAAGTGCACTGATGCTGCGAAGGTTGCTGGTTTTGCTCTGGCCACTTCCGCCCTTGTC
GTCTCAGGAGCAAATGCTGAAGGAGCTCCAAAACGTCTAACCTTCGACGAAATTCAAAGCAAGACATACATGGAAGTAAAGGGAACTGGAACTGCTAACC
AGTGCCCTACCATAGAAGGAGGTGTTGCCAGCTTTGCCTTCAAGCCAGGCAAATACAATGCCAAGAAATTCTGCTTAGAGCCCACATCATTCACGGTCAA
GGCAGAGAGTGTGAACAAGAATGCACCCCCAGATTTCCAGAAAACTAAGCTCATGACACGCTTAACCTACACCCTTGATGAGATTGAGGGACCATTCGAA
GTGTCTTCTGATGGCACTGTTAAGTTTGAGGAGAAGGATGGAATTGATTATGCTGCTGTTACAGTTCAGCTTCCTGGTGGTGAGCGTGTGCCCTTCCTCT
TCACTATCAAACAGCTAGTGGCAAGCGGCAAACCCAGAAAGCTTTAGCGGTGAATTCCTTGTGCCATCATACAGAGGGTTCATCCTTCCTTTGACCCAAG
GGACGGGTGGATCTACTGGCTATGACAACGCTTTTGCACTGCCTGCTGGAGGGGAGAGGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1F10.JPG