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Details




NbTI01F11

Phenotype Description
Moderately stunted plants
Annotation
Solyc10g008460.2.1;genomic_reference:SL2.50ch10 gene_region:2583446-2586373 transcript_region:SL2.50ch10:2583446..2586373+ functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic "
ref|XP_009588409.1|;PREDICTED: lanC-like protein GCL2 [Nicotiana tomentosiformis]
NbS00011558g0010.1;protein AED:0.12 eAED:0.12 QI:250|1|1|1|0.83|0.57|7|721|379; (*SWP) sp|Q9JJK2|LANC2_MOUSE (e_value=5e-74) LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1;; (*TAIR) AT2G20770.1 (e_value=0.0) | Symbols: GCL2 | GCR2-like 2 | chr2:8945380-8947041 FORWARD LENGTH=405;; (*ITAG) Solyc10g008460.2.1 (e_value=0.0) genomic_reference:SL2.40ch10 gene_region:2583446-2586373 transcript_region:SL2.40ch10:2583446..2586373+ functional_description:"LanC-like protein 2 (AHRD V1 ***- B6TCV9_MAIZE); contains Interpro domain(s) IPR020464 LanC-like protein, eukaryotic ";
AT2G20770.1;| Symbols: GCL2 | GCR2-like 2 | chr2:8945380-8947041 FORWARD LENGTH=405
GO ID (Nr annotation)
GO:0003824 GO:0008152
GO ID (Arabidopsis annotation)
GO:0001772 GO:0005829 GO:0005911 GO:0042101 GO:0045121 GO:0001784 GO:0004713 GO:0005524 GO:0016787 GO:0006955 GO:0018108 GO:0035556 GO:0043366 GO:0045059 GO:0045060 GO:0046638 GO:0046641 GO:0046777 GO:0050850 GO:0050852
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01F11
ATTACCCTACAAGTGAAGAAGATAAGCGGAGAGATGTTCTCGTCCATTGGTGCCACGGAGCTCCCGGGATTGCTCTAACACTTGTCAAGGCAGCTGAGTT
GTTCGGAGACAGAGAATTTCTTAATGCAGCAGTAGGTGCAGCAGAGGTAGTATGGAACCGCGGCCTTCTTAAACATGTCGGGATGTGCCATGGGATCAGC
GGGAATGCTTATGTCTTCCTATCGTTGTATCAGCTCACAGGAAACGTGGAGTATTTGTATAGAGCCAAAGCTTTTGCCTGCTTCCTTCTTGATAGAGCTC
ACAAGCTAATAGCAAAAGGAGAGATGCATGGAGGAGATAACCCATACTCTCTATTTGAAGGTATTGGGGGCATGGCTTATCTTTTCCTAGACATGACAGA
ACCTAAAGAAGCTAGATTTCCAGCCTATGGCTGTGAAAAAGTTCATGCCACTTAGAGAATGTATTAGCACTTCTCTTAATGTATAGAAAACTTATTCTGT
GACATGCACCTTAATATCTTCTGCAGTATTTCATTTGCTTTTACTCCACTTCCCCTATAAATGGGTTGACATCTTCTTGTCCCGGGTAGAACTCCAGTCA
TTTTCAGCACTTTCTTGGTAGTTCTAAGC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1F11.JPG