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Details




NbTI01F12

Phenotype Description
Severely stunted, bushy plants, pale green young leaves
Annotation
Solyc06g076510.2.1;genomic_reference:SL2.50ch06 gene_region:43933252-43936499 transcript_region:SL2.50ch06:43933252..43936499+ functional_description:"Phosphoserine phosphatase (AHRD V1 **** B6SU38_MAIZE); contains Interpro domain(s) IPR004469 Phosphoserine phosphatase SerB "
ref|XP_009607637.1|;PREDICTED: phosphoserine phosphatase, chloroplastic-like [Nicotiana tomentosiformis]
NbS00031391g0002.1;protein AED:0.35 eAED:0.35 QI:602|1|1|1|0.42|0.5|8|620|168; (*GB) gi|225457217|ref|XP_002284065.1| (e_value=7e-69) PREDICTED: phosphoserine phosphatase, chloroplastic [Vitis vinifera];; (*SWP) sp|O82796|SERB_ARATH (e_value=8e-53) Phosphoserine phosphatase, chloroplastic OS=Arabidopsis thaliana GN=PSP PE=1 SV=2;; (*TAIR) AT1G18640.2 (e_value=6e-54) | Symbols: PSP | 3-phosphoserine phosphatase | chr1:6416524-6418245 REVERSE LENGTH=295;; (*ITAG) Solyc06g076510.2.1 (e_value=9e-105) genomic_reference:SL2.40ch06 gene_region:43933252-43936499 transcript_region:SL2.40ch06:43933252..43936499+ functional_description:"Phosphoserine phosphatase (AHRD V1 **** B6SU38_MAIZE); contains Interpro domain(s) IPR004469 Phosphoserine phosphatase SerB ";
AT1G18640.2;| Symbols: PSP | 3-phosphoserine phosphatase | chr1:6416524-6418245 REVERSE LENGTH=295
GO ID (Nr annotation)
GO:0004647 GO:0006564
GO ID (Arabidopsis annotation)
GO:0004647 GO:0006564
GO ID (Tomato annotation)
GO:0004647 GO:0006564
GO ID (Niben annotation)
GO:0004647 GO:0006564
Sequence
>NbTI01F12
ACCAACTGCACCTACCGCTTCTCGGTCAGGTGCGCGTCTTCTCAAGCACCAAAAAAGGATTCGAGCAAGACAACCTTAAATTACATAAAAAGATTTGATT
TTTAACGACGCCCATCTCCAAGGTTTGTGAAATTCAGGTTTTAATGGAGGGACTGATGAGTTTTCAAGCGAACACTGTTCGTGCTGTCTCTAGACAGAAA
AACTCGGTCCTAGTTCCTGCATTCTCTTCAAAAATTACTAGTACAAGAGTTTCTGTTCAGCCAATTGGAATGGTGAGAAATTCCAGGTTGTTTAATTCAT
TTGTTGCTTCAGTTCAGCCCGTTGAAGCCTCTGCTGTTACACCTTTTGACAACACATTACCATCTAAAGAGGTTCTTGATGTTTGGCAAAATACGAATGC
TGTATGCTTTGATGTGGATAGCACTGTGTGCATAGACGAGGGTATAGATGAATTTGCAGAGTTTTGTGGGGCTGGAAAAGCTGTAGCAGAATGGACTGCT
AGGGCAATGAATGGCTCTGTTCCTTTCGAAGATGCATTGGCAGCTCGTCTGTCTCTTATCAACCCTTCATTGTCCCAACTCCAGGGATATTTCTTAAGAG
ACCTCCACGACTTTCTCCTGGGCATTGATCTATTTGGTCAAAGAAACTGAAAGATTAAAAAAGAAAGATGTTTATCTGGGTCTCAGGCGGGGTTTCCGTC
AAATGATCAATGTATTTCCCTTGTGGAAAATG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1F12.JPG