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Details




NbTI01G01

Phenotype Description
Stunted plants, slender, droopy branches, pale green leaves
Annotation
Solyc06g053160.2.1;genomic_reference:SL2.50ch06 gene_region:32373892-32381031 transcript_region:SL2.50ch06:32373892..32381031- functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core "
ref|XP_009761417.1|;PREDICTED: ATPase family AAA domain-containing protein 1-like [Nicotiana sylvestris]
NbS00028407g0014.1;protein AED:0.04 eAED:0.04 QI:115|1|1|1|1|1|5|439|394; (*GB) gi|224132668|ref|XP_002321379.1| (e_value=0.0) predicted protein [Populus trichocarpa];; (*SWP) sp|Q503W7|ATD1B_DANRE (e_value=2e-92) ATPase family AAA domain-containing protein 1-B OS=Danio rerio GN=atad1b PE=2 SV=2;; (*TAIR) AT5G53540.1 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21749561-21751099 REVERSE LENGTH=403;; (*ITAG) Solyc06g053160.2.1 (e_value=0.0) genomic_reference:SL2.40ch06 gene_region:32373892-32381031 transcript_region:SL2.40ch06:32373892..32381031- functional_description:"26S protease regulatory subunit 7 (AHRD V1 *--- PRS7_PRUPE); contains Interpro domain(s) IPR003959 ATPase, AAA-type, core ";
AT5G53540.1;| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:21749561-21751099 REVERSE LENGTH=403
GO ID (Nr annotation)
GO:0005634 GO:0016021 GO:0005524 GO:0008568 GO:0008152 GO:0031122
GO ID (Arabidopsis annotation)
GO:0005576 GO:0031981 GO:0043232 GO:0044444 GO:0003676 GO:0005102 GO:0030234 GO:0006915 GO:0006996 GO:0007162 GO:0007165 GO:0007569 GO:0008285 GO:0009653 GO:0009694 GO:0010243 GO:0010467 GO:0014070 GO:0016070 GO:0019538 GO:0021549 GO:0022402 GO:0022603 GO:0030162 GO:0031329 GO:0031400 GO:0031401 GO:0031647 GO:0033554 GO:0042326 GO:0042493 GO:0043065 GO:0043085 GO:0045786 GO:0045893 GO:0051094 GO:0051128 GO:0051240 GO:0051336 GO:0051348 GO:0060429 GO:0071900 GO:1902533 GO:1903320 GO:1903649 GO:1903827 GO:2000026
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005615 GO:0005887 GO:0030141 GO:0043025 GO:0004996 GO:0005179 GO:0008528 GO:0042802 GO:0046872 GO:0006006 GO:0007189 GO:0007190 GO:0009755 GO:0019233 GO:0038194 GO:0042755 GO:0045596 GO:0045779
Sequence
>NbTI01G01
TGGTTTTACCACAGATCATAATGCCCGGGTTATGGTACTTGCTGCTACTAATCGGCCATCTGAGCTTGATGAAGCAATTCTTCGACGCCTTCCTCAGGCC
TTTGAGATCGGTATGCCTGACTGCAAAGAGAGAGCTGAGATTTTGAAGGTTATCCTGAGAGGCGAGAAAGTACAAGATAGCATTGACTATGACCGCATTG
CTGGATTGTGTGATGGATACACTGGTTCAGATCTTCTTGAGCTCTGTAAAAAAGCTGCCTACTTCCCCATCCGGGACCTGCTTGATGATGAGAAGAGTGG
GAAGCAATCTGCGGAGCCAAGGCCGCTGTCAGAATCGGATTTGGAGAGGGTTTTGGCTACATCGAAAAAGACAAATGTTGCTGCAAGTGAATACAGCAGA
TTAAGTTCACTGTCAGCAGGATGGTCCGCTCATGCAGATTCAGATGATTACCCTGTCCAAGAAGCAATTAACGAGCTTTCGAAGCTTGTGATTACCCAAA
TTTTGAATCTCCAGTCAGATAACCGGGCACAGGAACTCCTATAAAGTATCAGCCTGTAAATTGCAGCTTGGCCAGGAAACCTGTCTTCTTCAATGTAAGC
TGTATTTACTTGCAGTTGGATGGCCAAAGCATGCGGATTCAGATGATTACCTTGTCCGAGCTGCAATTGACCAGCTATCTAAGCCAGTCACTTTCCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1G1.JPG