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Details




NbTI01G02

Phenotype Description
Moderately stunted, bushy plants, yellow green young leaves
Annotation
Solyc03g115720.2.1;genomic_reference:SL2.50ch03 gene_region:59402193-59411198 transcript_region:SL2.50ch03:59402193..59411198- functional_description:"ATP-dependent protease La (LON) domain (AHRD V1 *--- A3YXA7_9SYNE); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal "
ref|XP_009617176.1|;PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At5g61350 [Nicotiana tomentosiformis]
NbS00038047g0009.1;protein AED:0.14 eAED:0.14 QI:160|1|1|1|0.88|0.88|18|203|487; (*GB) gi|297733938|emb|CBI15185.3| (e_value=0.0) unnamed protein product [Vitis vinifera];; (*SWP) sp|Q17RB8|LONF1_HUMAN (e_value=3e-44) LON peptidase N-terminal domain and RING finger protein 1 OS=Homo sapiens GN=LONRF1 PE=2 SV=2;; (*TAIR) AT1G18660.1 (e_value=0.0) | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr1:6421433-6425565 FORWARD LENGTH=486;; (*ITAG) Solyc03g115720.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:59402193-59411198 transcript_region:SL2.40ch03:59402193..59411198- functional_description:"ATP-dependent protease La (LON) domain (AHRD V1 *--- A3YXA7_9SYNE); contains Interpro domain(s) IPR003111 Peptidase S16, lon N-terminal ";
AT1G18660.1;| Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr1:6421433-6425565 FORWARD LENGTH=486
GO ID (Nr annotation)
GO:0005515 GO:0008270
GO ID (Arabidopsis annotation)
GO:0005515 GO:0008270
GO ID (Tomato annotation)
GO:0005515 GO:0008270
GO ID (Niben annotation)
GO:0005515 GO:0008270
Sequence
>NbTI01G02
TAGCAGTCCCCTTCTAAATTTGGAGAAATCGATCAAAGCTACACTTGGAACGAGAAGCCACGGGATACCACAGCGCAGTGATGATTTTGACTGTACTCTG
TGCTTAAAGCTATTATATGAACCTATAACAACTCCTTGTGGACATTCTTTTTGCCGTGCATGCCTCTTCCAATCAATGGACCGATATAACAGATGCCCAT
TGTGCCGAACAGTTCTTTTCATTAGTCCCAGAACATGTGCAATCAGGTTAGTTGCTTATGGTACATCCTCCCATTGTACTTGTTTTACACCTTTACTGCT
GAGACTACAGCTTCTCTATTTTTCTTTTTCTTTTTAGGATAGTAATTGATCCTACTGGTATTCGTCATTCAGTCGCATGCTTCATTTCTTCCTCTCTTTT
AATGCTATAAAAGAGATTGATTGTCTGGACCAAAAGTCTTCCTGCAAAAGGAATAAAATATCGTGTCTGTACCTTTACACTCCTTGATGACTGTTCTCAC
TAATATTAATGAGTTAATTGAACACATTTTGTCCCATGTGGCTAAGATTGCCTTATCTATTTTTTGTCTTGTGTGGCTACTGCCGTATTCTTATTTTGCA
CTTTTTCAGTGTAACATTGAATAACATAATAGAAAAGAGTTTTCCCGAGGAATATGCTGAAAGGAAGGCTGAGAATGACAGCCTTATAAACCTTGGTGTT
GACTTGCTGCCTCTTTTTGTCATGGACGTTTATTCTACCATGCGAGAAGCTTGCACTTAACATTTTTTGAACCTCCGTTACAGACTTATGGGTGAAGTGC
TACTTAACTATTATATTTCTTGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1G2.JPG