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Details




NbTI01G05

Phenotype Description
Stunted, bushy plants, cell death in lower leaves
Annotation
Solyc11g044230.1.1;evidence_code:10F1H0E1IEG genomic_reference:SL2.50ch11 gene_region:35165332-35168495 transcript_region:SL2.50ch11:35165332..35168495+ functional_description:"UPF0727 protein C6orf115 homolog (AHRD V1 *-*- CF115_XENLA)"
ref|XP_009792409.1|;PREDICTED: costars family protein [Nicotiana sylvestris]
NbS00056856g0002.1;protein AED:0.32 eAED:0.32 QI:101|1|1|1|1|1|2|486|93; (*SWP) sp|Q6AVK1|COSA_ORYSJ (e_value=9e-34) Costars family protein OS=Oryza sativa subsp. japonica GN=Os03g0690000 PE=3 SV=1;; (*TAIR) AT4G33640.1 (e_value=3e-32) | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16159727-16160211 REVERSE LENGTH=95;; (*ITAG) Solyc11g044230.1.1 (e_value=1e-26) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch11 gene_region:35165332-35168495 transcript_region:SL2.40ch11:35165332..35168495+ functional_description:"UPF0727 protein C6orf115 homolog (AHRD V1 *-*- CF115_XENLA)";
AT4G33640.1;| Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16159727-16160211 REVERSE LENGTH=95
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI01G05
CCATCGACAGGAACCATGAACGTTGAAGAAGAGGTTGAACGACTCAAAGAAGAGATCAAGAGACTCGGCATAGCCCAAGATGATGGCTCTTACAAGGTAA
CATTCGGTGTACTGTTTCATGATGATAGATGCGCCAACATCTTTGAGGCGCTCGTTGGGACATTAAGAGCTGCAAAGAAACGGAAAATACTTACATACGA
TGGTGAGCTCCTCCTGCAAGGGGTTCATGACAATGTGGAAATCATTCTCAAACCACCATCGGTGACTTCTGGTGCTACGGCAGTTACGAGTTCATAAATG
CTTTTTAATGCTCTACCTTGTTTCGTGTTGTACTTTCGATAGAAATACATCTGGTCATGGCGAATATGTTTTATTACTTCCTGGAATGGAAGCGTGTGAA
GGATCAGAATGGTGTACACTTCCATTCCTTTGTTATGAAGATATTATTGCGTAATTTCTTTTTTATTCACAACTCCAGCTTCTGACAATTCGGGTTAGAT
ATTAGATATATATTTCCTTAAGGGGGAATAATCAAATTGTAGAAGCATAACACCTGGAAACTTTTTGCTTCTAAACACTCCTTCTTGTGCTGTATAATTG
GTATGATTCAATCAACATCTAGATTAGTGTAG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1G5..JPG