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Details




NbTI01G07

Phenotype Description
Stunted plants, spotted cell death in the lower leaves, pale green leaves
Annotation
Solyc02g067180.2.1;genomic_reference:SL2.50ch02 gene_region:31941535-31947091 transcript_region:SL2.50ch02:31941535..31947091- functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme "
gb|AJF83863.1|;cystathionine gamma synthase 1 [Nicotiana tabacum]
NbS00002367g0012.1;protein AED:0.13 eAED:0.15 QI:36|0.69|0.71|0.92|1|1|14|157|644; (*GB) gi|5822270|pdb|1QGN|A (e_value=0.0) Chain A, Cystathionine Gamma-Synthase From Nicotiana Tabacum;; (*SWP) sp|P55217|METB_ARATH (e_value=0.0) Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3;; (*TAIR) AT3G01120.1 (e_value=0.0) | Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563;; (*ITAG) Solyc02g067180.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:31941535-31947091 transcript_region:SL2.40ch02:31941535..31947091- functional_description:"Cystathionine gamma synthase (AHRD V1 ***- Q6R8F6_SOLLC); contains Interpro domain(s) IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme ";
AT3G01120.1;| Symbols: MTO1, CGS, ATCYS1, CGS1 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:39234-41865 REVERSE LENGTH=563
GO ID (Nr annotation)
GO:0003824 GO:0030170
GO ID (Arabidopsis annotation)
GO:0003824 GO:0030170
GO ID (Tomato annotation)
GO:0003824 GO:0030170
GO ID (Niben annotation)
GO:0003824 GO:0030170
Sequence
>NbTI01G07
CAGAACTTTGTTAGGCAGTTGAGCATTAAGGCTCGGAGGAACTGCAGCAACATCGGTGTGGCTCAAGTTGTGGCGGCTTCGTGGTCTAACAATAACTCAT
CTCCTGATTTTACTCCGGTGGCTAAGGCCGTCGATTCCGCCGCCGCGTCCATTGCTCCTGTTGATACCACGATACTTAATGAGGACGTGGCACTGGTGGA
AAATGAGACCTGTAATGATCAAAATGTACAGTTTGATAGTTTGCCAAGTGTGAAATACGCTTCGTTTTTGAATTCTGATGGGAGTGTCACAATTCATGCC
GGTGAAAGGTTGGGACGTGGCATTGTTACGGATGCAATTACAACCCCAGTAGTTAACACATCTGCTTATTTCTTCAACAAGACTTCTGAGCTCATTGATT
TTAAGGAGAAAAGACGTGCAAGTTTTGAATATGGGCGCTATGGGAACCCAACTACTGTTGTTTTAGAGGAGAAGATAAGCGCACTGGAGGGTGCTGAATC
AACCTTGTTAATGGCATCTGGAATGTGCGCCAGTACTGTAATGCTGCTGGCGTTGGTTCCTGCTGGAGGCCATATTGTTACAACCACAGACTGCTATAGG
AAGACCCGGATCTTTATTGAAACTATACTTCCTAAAATGGGGATTACGGCCACGGTCATTGACCCAGCCGATGTCGGAACTCTGGAGTTGGCTCTAAATC
AGAAGAAAGTGAATCTTTTCTTTACCGAGTCTCCAACAAATCCATTCCTCAGATGTGTAGACATTGAGCTGGTTTCAAAGCTTTGTCATGAAAAAGGAGC
CTTGGTTTGCATAGATGGGACGTTTGCAACTCCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1G7.JPG