Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI01G09

Phenotype Description
Stunted, bushy plants, mottled leaves, yellow green young leaves
Annotation
Solyc03g123410.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch03 gene_region:64320774-64321400 transcript_region:SL2.50ch03:64320774..64321400- functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold "
ref|XP_009760539.1|;PREDICTED: auxin-binding protein ABP19a-like [Nicotiana sylvestris]
NbS00017066g0003.1;protein AED:0.01 eAED:0.01 QI:0|-1|0|1|-1|1|1|0|208; (*GB) gi|222051768|dbj|BAH15357.1| (e_value=3e-127) germin like protein [Nicotiana tabacum];; (*SWP) sp|Q9ZRA4|AB19A_PRUPE (e_value=7e-102) Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1;; (*TAIR) AT5G20630.1 (e_value=1e-95) | Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin 3 | chr5:6975315-6975950 REVERSE LENGTH=211;; (*ITAG) Solyc03g123410.1.1 (e_value=3e-133) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch03 gene_region:64320774-64321400 transcript_region:SL2.40ch03:64320774..64321400- functional_description:"Oxalate oxidase-like germin 171 (AHRD V1 **** Q9FPQ0_BETVU); contains Interpro domain(s) IPR014710 RmlC-like jelly roll fold ";
AT5G20630.1;| Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 | germin 3 | chr5:6975315-6975950 REVERSE LENGTH=211
GO ID (Nr annotation)
GO:0030145 GO:0045735
GO ID (Arabidopsis annotation)
GO:0030145 GO:0045735
GO ID (Tomato annotation)
GO:0030145 GO:0045735
GO ID (Niben annotation)
GO:0030145 GO:0045735
Sequence
>NbTI01G09
ACAAACTAACTATTCCTAGCTAGGAAATAAAAATGTTTAAACTTCTGTTTCTCCTGGCTATCTTCATCTTGGGCAGCAATGCTGCTGTCCAAGATTTCTG
CGTGGCAGACCTAAAAGGCCCAGAATCACCTGCTGGCTATTCTTGCAAAAGTGTAGCCAATGTAACAGTCGACGATTTCGTGTTTTCTGGGCTTAGTGCA
GCTGGAAACACAGCGAGCATTATCAAAGCTGCAGTTACACCAGCATTTGCAGCCCAATTTCCAGGTCTTAATGGGCTTGGGCTTTCTGCAGCCCGTTTAG
ACTTAGCCCCAGGTGGTGTAATTCCATTTCACACTCACCCTGGTGCTTCTGAAGTTTTACTTGTAGTTCAAGGTTCAATTACAGCTGGTTTTGTTTCTTC
AGCAAACGCTGTTTACTTAAAAACACTTAAAAAAGGTGATCTTATGATATTTCCACAAGGTTTATTGCATTTTCAAGTGAGTGATGCTGGTTACACTTCT
GTTGGTTTTGTGTTTTTTAGTAGTTCAAATCCTGGACTTCAGATTACAGATTTTGCATTATTTGCTAATGATTTGCCCACTAAGTTGGTAGAGGCTACTA
CTTTCCTTGATGAAGCTACAATCAAGAAGCTCAAGGGTGTTCTTGGAGGAACTAACTAAGAATCTACCAATGAAGTAGAAGCTGTTTATCCTTTTCTTTT
TCAGTAATTTCCTTAATTGTTTGTACTTCTTGTTGACAATTGGATATTGTAATTTGTGTTTGTTGATGATTCTTTCTGTAAGTGCCATGTTTTTCTGAAG
TTAAGTTTATGTCG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1G9.JPG