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Details




NbTI01H01

Phenotype Description
Moderately sunted plants, mottled leaves
Annotation
Solyc08g005490.2.1;genomic_reference:SL2.50ch08 gene_region:361626-365816 transcript_region:SL2.50ch08:361626..365816- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q5VRG9_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative "
ref|XP_009794519.1|;PREDICTED: probable methyltransferase PMT20 [Nicotiana sylvestris]ref|XP_009794520.1| PREDICTED: probable methyltransferase PMT20 [Nicotiana sylvestris]
NbS00013067g0003.1;protein AED:0.26 eAED:0.26 QI:384|0.87|0.88|1|0.75|0.66|9|0|571; (*SWP) sp|Q94II3|PMTL_ARATH (e_value=0.0) Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1;; (*TAIR) AT4G19120.2 (e_value=0.0) | Symbols: ERD3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10460665-10463034 REVERSE LENGTH=600;; (*ITAG) Solyc08g005490.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:361626-365816 transcript_region:SL2.40ch08:361626..365816- functional_description:"Dehydration-responsive protein-like (AHRD V1 **-- Q5VRG9_ORYSJ); contains Interpro domain(s) IPR004159 Protein of unknown function DUF248, methyltransferase putative ";
AT4G19120.2;| Symbols: ERD3 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr4:10460665-10463034 REVERSE LENGTH=600
GO ID (Nr annotation)
GO:0008168
GO ID (Arabidopsis annotation)
GO:0008168
GO ID (Tomato annotation)
GO:0008168
GO ID (Niben annotation)
GO:0008168
Sequence
>NbTI01H01
TCAGGTTCAGTTTGCTCTGGAACGTGGAATTCCTGCAATTCTGGGAATCATTTCTACACAGCGTCTTCCTTTCCCTTCAAATTCTTTTGATATGGCTCAT
TGCTCAAGATGCCTAATTCCATGGACTGAATTCGGTGGAGTTTACCTTCTTGAGATACATCGTATACTCCGACCTGGCGGTTTCTGGGTCCTTTCTGGCA
CACCGGTGAACTATCAACATCGTTGGAGAGGATGGAATACCACCATTGAGGAGCAAAAATCGGATTACGATAAGTTGCAAGAGTTGCTAACTTCAATGTG
CTTCAAATTATTCAACAAGAAGGACGACATTGCAGTGTGGCAGAAGTTGTCCGACAGTAACTGCTATAAGAAGCTTGATAATCCCGACAACTATCCATCA
AAATGTGATGATGGTACTGAACCTGATTCAGCATGGTATACTCCTCTTCGGCCTTGTGTGGTTGTGCCAAATCCATTTGCTAAGAAACTCAAGTTGGACA
CTCT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1H1.JPG