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Details




NbTI01H04

Phenotype Description
Moderately stunted, bushy plants, droopy leaves
Annotation
Solyc01g089970.2.1;genomic_reference:SL2.50ch01 gene_region:75448922-75450433 transcript_region:SL2.50ch01:75448922..75450433+ functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core "
ref|XP_009788779.1|;PREDICTED: nucleoside diphosphate kinase 1 [Nicotiana sylvestris]
NbS00026910g0004.1;protein AED:0.22 eAED:0.22 QI:158|1|1|1|1|1|4|154|148; (*GB) gi|75283426|sp|Q56E62.1|NDK1_TOBAC (e_value=3e-102) RecName: Full=Nucleoside diphosphate kinase 1; AltName: Full=Nucleoside diphosphate kinase I; Short=NDK I; Short=NDP kinase I; Short=NDPK I;; (*SWP) sp|Q56E62|NDK1_TOBAC (e_value=9e-104) Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1;; (*TAIR) AT4G09320.1 (e_value=1e-90) | Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169;; (*ITAG) Solyc01g089970.2.1 (e_value=4e-101) genomic_reference:SL2.40ch01 gene_region:75448922-75450433 transcript_region:SL2.40ch01:75448922..75450433+ functional_description:"Nucleoside diphosphate kinase (AHRD V1 ***- Q3Y5A4_SOLCH); contains Interpro domain(s) IPR001564 Nucleoside diphosphate kinase, core ";
AT4G09320.1;| Symbols: NDPK1 | Nucleoside diphosphate kinase family protein | chr4:5923424-5924366 FORWARD LENGTH=169
GO ID (Nr annotation)
GO:0004550 GO:0006165 GO:0006183 GO:0006228 GO:0006241
GO ID (Arabidopsis annotation)
GO:0004550 GO:0006165 GO:0006183 GO:0006228 GO:0006241
GO ID (Tomato annotation)
GO:0004550 GO:0006165 GO:0006183 GO:0006228 GO:0006241
GO ID (Niben annotation)
GO:0004550 GO:0006165 GO:0006183 GO:0006228 GO:0006241
Sequence
>NbTI01H04
TCAAAGAAGCGAAAATGGAGCAGACTTTCATCATGATCAAGCCTGATGGTGTCCAACGTGGCCTGGTTGGTGAGATTATCGGAAGATTTGAGAAGAAAGG
ATTCTCTTTGAAAGGCTTGAAGCTCATCACTGTGGATCGTGCCTTTGCTGAAAAGCATTACGCAGACTTGTCTGCTAAGCCTTTCTTTAGTGGTCTTGTT
GATTATATTATCTCTGGCCCCGTTGTTGCAATGGTCTGGGAAGGTAAGTGTGTAGTTACCACTGGCAGGAAGATCATTGGAGCAACAAACCCATTGGAGT
CTGCTCCTGGTACAATCCGTGGTGATTATGCTATTGACATTGGCAGGAACGTTATTCATGGAAGTGATGCAGTCGAGAGTGCAAGGAAGGAAATTGCTCT
TTGGTTCCCCGAAGGAGTTGCAGAGTGGCAGAGCAGCCTTCACTCTTGGATCTATGAGTAGAAATGTTTTGTTTACTTTAGAACTCTATTAATGGCCTGC
CTGTTTGGGTGTAACTTATGAATTTTGGATGTGATTTGAGTCTAGAAGTTTATTGTTTGAGGTTTTCTGTTATTCCCTATTTCAAGAATATTTAATGTGA
TCAGTATTACTTTCGTGAT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1H4..JPG