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Details




NbTI01H05

Phenotype Description
Severely stunted plants, thick, crinkled, white green leaves
Annotation
Solyc06g071870.2.1;genomic_reference:SL2.50ch06 gene_region:40668511-40671232 transcript_region:SL2.50ch06:40668511..40671232- functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal "
ref|XP_009799491.1|;PREDICTED: 60S ribosomal protein L17-1-like [Nicotiana sylvestris]
NbS00036485g0008.1;protein AED:0.09 eAED:0.09 QI:0|0.85|0.62|0.87|0.85|0.75|8|431|203; (*GB) gi|40287468|gb|AAR83848.1| (e_value=2e-106) ribosomal protein PETRP [Capsicum annuum];; (*SWP) sp|Q93VI3|RL171_ARATH (e_value=2e-95) 60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1;; (*TAIR) AT1G27400.1 (e_value=2e-96) | Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176;; (*ITAG) Solyc06g071870.2.1 (e_value=3e-104) genomic_reference:SL2.40ch06 gene_region:40668511-40671232 transcript_region:SL2.40ch06:40668511..40671232- functional_description:"60S ribosomal protein L17 (AHRD V1 ***- D7KV33_ARALY); contains Interpro domain(s) IPR005721 Ribosomal protein L22/L17, eukaryotic/archaeal ";
AT1G27400.1;| Symbols: | Ribosomal protein L22p/L17e family protein | chr1:9515230-9516725 FORWARD LENGTH=176
GO ID (Nr annotation)
GO:0015934 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0015934 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0015934 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0015934 GO:0003735 GO:0006412
Sequence
>NbTI01H05
AGAGCGACCTCTACCAGCCGCAGCAGGAGAAGGGGATTAGCAGTAGCATCGCCGGCAGCCATGGTTAAGTATTCGAGGGAACCCGACAACCCTACCAAGT
CCTGCAAAGCTAGGGGCGCTAGTCTCAGAGTTCACTTTAAGAACACACGAGAGACAGCCCATGCACTTAGGAAAATGCCTTTGGACAAGGCCAAGAAATA
TCTGGAAGATGTTCTTGCACACAAACAAGCCATTCCTTTCACACGCTTTTGTGGTGGGGTTGGTCGTACTGCACAGGTGAAGCATCGCCATTCAAATGGT
CAAGGACGCTGGCCTGTCAAATCTGCAAAAATTATTCTTGATTTACTCAAGAATGCTGAGAGCAATGCTGAGGTTAAAGGCTTGGATGTGGATTCACTTT
TCATATCTCACATCCAAGTGAACCAAGCACAAAAACAGAGGCGCCGCACGTACCGAGCTCATGGAAGAATAAACCCCTACATGTCTCACCCCTGCCATGT
TGAGTTGACATTATCTGAAAAGGAAGAGTCTGTCAAGAAGGAGCCTGAGACACAGTTGGCTCCTAGAAAGGCGAAGGCATCCTCTTAATCCGGGCAGTGA
CTCCAGGAATGCAGATGGTGGAATGTTATCCGTGTCCTTGTAGTCTGTGTCATGAAACAATTTTGGCATTTTGAACCATGTATGTGTTTCTCCAGAAATT
TGTGGTACTATT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1H5.JPG