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Details




NbTI01H06

Phenotype Description
Moderately stunted plants, mottled, crinkled, yellow green leaves
Annotation
Solyc03g120430.2.1;genomic_reference:SL2.50ch03 gene_region:62875286-62878923 transcript_region:SL2.50ch03:62875286..62878923- functional_description:"Glycerate kinase (AHRD V1 **** C1DYY5_9CHLO)"
ref|XP_009791866.1|;PREDICTED: D-glycerate 3-kinase, chloroplastic [Nicotiana sylvestris]
NbS00026247g0013.1;protein AED:0.08 eAED:0.08 QI:212|1|0.91|1|0.90|0.91|12|416|454; (*GB) gi|255552979|ref|XP_002517532.1| (e_value=0.0) D-glycerate 3-kinase, chloroplast precursor, putative [Ricinus communis];; (*SWP) sp|Q944I4|GLYK_ARATH (e_value=0.0) D-glycerate 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=GLYK PE=1 SV=2;; (*TAIR) AT1G80380.2 (e_value=0.0) | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30217332-30219784 FORWARD LENGTH=456;; (*ITAG) Solyc03g120430.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:62875286-62878923 transcript_region:SL2.40ch03:62875286..62878923- functional_description:"Glycerate kinase (AHRD V1 **** C1DYY5_9CHLO)";
AT1G80380.3;| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr1:30217895-30219784 FORWARD LENGTH=364
GO ID (Nr annotation)
GO:0005634 GO:0005829 GO:0009570 GO:0009941 GO:0004849 GO:0005524 GO:0008887 GO:0006206 GO:0009854 GO:0016310 GO:0043097
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0005886 GO:0016021 GO:0030057 GO:0005509 GO:0007156 GO:0016339
Sequence
>NbTI01H06
ACAAAAGAAGGTGTGAAGATGAAGCTTCCTCGATATGATAAATCTGCGTACAATGGGAGAGGTGACAGAGCTGATCCCTCCACATGGCCATAGGTTGAAG
GGCCTTTATCGGTAATTTTGTTCGAGGGTTGGATGCTTGGTTTCAAACCGCTTCCACCTGAAGTTGTCAAAGCTGTTGATCCACAGCTTGAGACAGTCAA
CAAGAACTTAGAAGCTTATTATGATGCATGGTATAAGTATGTTGAATCGTGGATTATCATCAAGATTCATGATCCAAGTTATGTATATCAATGGCGTTTG
CAGGCGGAGATTGCAATGAGGGCTGATGGGAATCTTGGGATGTCCGATGAGGAGGTGAGGGATTTTGTATCCCGCTACTTGCCAGCATACAAGGCTTACC
TTCCCACACTCTACTCAGAAGGACCTCCTGGCGCAGACCCGGAGCATGTTCTTCTCATTGAAATCGATGAAGGGAGAAATCACCTCCTTGGTAGCTAAGG
TAATACTGCAATTATGGAGATGGTTTTGATCCTCGAGTGGGTTTGATGAAAAAGAATGGGAACCCTGAGGGGGATTTTTTATAAATATAAACTTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:1E1-1H12 [7-5-12]//1H6.JPG