Noble Research Institute, LLC   Noble Research Institute | VIGS Database  
      VIGS Phenomics and Functional Genomics Database  
Details




NbTI01H08

Phenotype Description
Moderately stunted, bushy plants, mild yellow green leaves
Annotation
Solyc02g082760.2.1;genomic_reference:SL2.50ch02 gene_region:40980455-40984836 transcript_region:SL2.50ch02:40980455..40984836- functional_description:"Catalase (AHRD V1 **** O24511_TOBAC); contains Interpro domain(s) IPR018028 Catalase related subgroup "
gb|ACL27272.1|;catalase [Nicotiana benthamiana]
NbS00006116g0019.1;protein AED:0.27 eAED:0.27 QI:568|1|1|1|1|1|7|0|473; (*GB) gi|219560127|gb|ACL27272.1| (e_value=0.0) catalase [Nicotiana benthamiana];; (*SWP) sp|P49315|CATA1_NICPL (e_value=0.0) Catalase isozyme 1 (Fragment) OS=Nicotiana plumbaginifolia GN=CAT1 PE=2 SV=1;; (*TAIR) AT4G35090.1 (e_value=0.0) | Symbols: CAT2 | catalase 2 | chr4:16700937-16703215 REVERSE LENGTH=492;; (*ITAG) Solyc02g082760.2.1 (e_value=0.0) genomic_reference:SL2.40ch02 gene_region:40980455-40984836 transcript_region:SL2.40ch02:40980455..40984836- functional_description:"Catalase (AHRD V1 **** O24511_TOBAC); contains Interpro domain(s) IPR018028 Catalase related subgroup ";
AT4G35090.2;| Symbols: CAT2 | catalase 2 | chr4:16701105-16703215 REVERSE LENGTH=474
GO ID (Nr annotation)
GO:0004096 GO:0020037 GO:0006979 GO:0055114
GO ID (Arabidopsis annotation)
GO:0004096 GO:0020037 GO:0006979 GO:0055114
GO ID (Tomato annotation)
GO:0004096 GO:0020037 GO:0006979 GO:0055114
GO ID (Niben annotation)
GO:0004096 GO:0020037 GO:0006979 GO:0055114
Sequence
>NbTI01H08
TACTTTTTTCTTTAGTTATTCAATTACAACTCTCTCTTTAGCTTTCTGAAGCAAAAGAAAGGCACTAATGGATCCATACAAGTATCGTCCGTCAAGTGCC
TTCAATTCTCCATTCTGCACCACTAATTCTGGCGCTCCTGTTTTTAACAACAATTCATCTCTTACTGTTGGTGCAAGAGGTCCTATATTGCTTGAGGATT
ATCATTTGGTGGAGAAACTTGCCAATTTTGACAGGGAACGTGTCCCTGAACGTGTTGTTCATGCCCGAGGTGCTAGTGCCAAAGGGTTCTTTGAAGTTAC
CCATGACATCACTCACCTTACCTGTGCTGATTTCCTTCGAGCTCCCGGTGTCCAGACTCCTGTCATTGTGAGATTCTCCACTGTTATACATGAGAGGGGT
AGTCCTGAAACTCTGAGGGACCCTCGTGGTTTTGCTGTCTAGTTCTACACCAGAGAGGGAAACTTTGATCTGGTAGGGAACAACTTCCCCGTCTTCTTTA
TCCATGATGAAATGAAGTTCCCTGACATGGTCCA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1H8.JPG