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Details




NbTI01H10

Phenotype Description
Moderately stunted, bushy plants, mottled leaves
Annotation
Solyc11g010600.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch11 gene_region:3663373-3668581 transcript_region:SL2.50ch11:3663373..3668581+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant "
ref|XP_009623753.1|;PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Nicotiana tomentosiformis]
NbS00018643g0011.1;protein AED:0.26 eAED:0.26 QI:0|1|0.88|1|1|1|9|0|471; (*SWP) sp|Q8W486|Y1491_ARATH (e_value=5e-75) DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1;; (*TAIR) AT5G65470.1 (e_value=0.0) | Symbols: | O-fucosyltransferase family protein | chr5:26172432-26174904 FORWARD LENGTH=504;; (*ITAG) Solyc11g010600.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch11 gene_region:3663373-3668581 transcript_region:SL2.40ch11:3663373..3668581+ functional_description:"Os01g0841200 protein (Fragment) (AHRD V1 **-- Q0JHU9_ORYSJ); contains Interpro domain(s) IPR004348 Protein of unknown function DUF246, plant ";
AT4G24530.1;| Symbols: | O-fucosyltransferase family protein | chr4:12667424-12669713 REVERSE LENGTH=519
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO:0005576 GO:0005768 GO:0031982 GO:0043005 GO:0043232 GO:0044422 GO:0044463 GO:0098590 GO:0098793 GO:0098794 GO:0005102 GO:0005230 GO:0046872 GO:0002376 GO:0006812 GO:0007165 GO:0007611 GO:0009605 GO:0009628 GO:0009966 GO:0010038 GO:0010243 GO:0010817 GO:0033555 GO:0042391 GO:0048167 GO:0048513 GO:0048522 GO:0071407 GO:1901700 GO:1903530 GO:1990267
GO ID (Tomato annotation)
GO:0005886 GO:0043231 GO:0044444 GO:0004930 GO:0005515 GO:0007186 GO:0007548 GO:0031328 GO:0042221 GO:0044702 GO:0048513 GO:0048608 GO:0065008 GO:0080090
GO ID (Niben annotation)
GO:0005739 GO:0005765 GO:0005829 GO:0005902 GO:0008287 GO:0016324 GO:0033180 GO:0043209 GO:0070062 GO:0004721 GO:0005524 GO:0046961 GO:0006470 GO:0010468 GO:0015991 GO:0046034 GO:0050880 GO:0050896
Sequence
>NbTI01H10
CACTTCTTGTATTCCTTTCTTCTAAGTTCTTTTGAGCATTTCTATAGCCAACCCCTTTTCTTTATTTTGCTTTATAATTCATCAGAGGTTGAGCCAAATT
TGTATCAACAGAAGCAGAAACATGAGAATGAGAGGAGGTGCTATAGCTGGTGTTTTTGTGCTTCTTTTGCCTATTTTCGTTGCTAATCTTTTCAGCCATG
CTTCCCCCACCATTCTCAAGGATTTGAATGCTCCAAAATTCAGGCACTCACGTCTTGCGAAGAGTGCTTTACAACGCCAAACTTCTAATGAAGAACAGTC
AGAGCTTTGGACGCCTTTGGCACACCAAGGATGGAAACCGTGTACTGAATCTGATGCTGCCTCCACATTACCTGAAAAGTCTGAGGGATACGTGCAAGTG
TTCCTTGATGGAGGACTTAATCAACAGAGAATGGGGATATGCGATGCAGTTGTCGTTGCCAAAATTCTGAATGCGACACTTGTGATCCCTCAGTTGGAAG
TAAATCCTGTTTGGCAAGATTCAAGCTCATTCAGTGATATCTTTGATGTGGATCACTTCATCAATGCATTGAAAGGCGACATATCTATAGTCAAAGAGTT
GCCTGGTGAACTCTCTTGGAGCACACGAGAATATTATGGCACAGCTATTCGACCTACAAGAATCAAGACTGCTCCTGTCCATGCTTCAGCAAATTGGTAT
TTAGAGAATGTATCACCTGTCCTGCAGAGTTATGGAATTGCTGCCATAGCGCCATTTTCTCATCGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

1-1:1E1-1H12 [7-5-12]//1H10.JPG