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Details




NbTI02B04

Phenotype Description
Moderately stunted plants, morltled, mosaic, pale leaves
Annotation
Solyc08g081570.2.1;genomic_reference:SL2.50ch08 gene_region:61751474-61756267 transcript_region:SL2.50ch08:61751474..61756267- functional_description:"2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase (AHRD V1 **** A9ZN13_HEVBR); contains Interpro domain(s) IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core "
ref|XP_006343929.1|;PREDICTED: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Solanum tuberosum]
NbS00051098g0007.1;protein AED:0.29 eAED:0.33 QI:66|0.33|0|1|0.66|0.75|4|0|300; (*GB) gi|374639357|gb|AEZ55667.1| (e_value=3e-54) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Salvia miltiorrhiza];; (*SWP) sp|Q9M4W3|ISPF_CATRO (e_value=2e-54) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus GN=ISPF PE=2 SV=1;; (*TAIR) AT1G63970.1 (e_value=2e-52) | Symbols: ISPF, MECPS | isoprenoid F | chr1:23738923-23740336 REVERSE LENGTH=231;; (*ITAG) Solyc08g081570.2.1 (e_value=2e-75) genomic_reference:SL2.40ch08 gene_region:61751474-61756267 transcript_region:SL2.40ch08:61751474..61756267- functional_description:"2-C-methyl-D-erythritol 2 4-cyclodiphosphate synthase (AHRD V1 **** A9ZN13_HEVBR); contains Interpro domain(s) IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core ";
AT1G63970.1;| Symbols: ISPF, MECPS | isoprenoid F | chr1:23738923-23740336 REVERSE LENGTH=231
GO ID (Nr annotation)
GO:0008685 GO:0016114
GO ID (Arabidopsis annotation)
GO:0008685 GO:0016114
GO ID (Tomato annotation)
GO:0008685 GO:0016114
GO ID (Niben annotation)
GO:0008685 GO:0016114
Sequence
>NbTI02B04
GTTTTTCTCCGGTGTTTTGCTATCAGCTTGTTGCGGAAGAGACCCAGCTTTCTTGTACTAAGTGGTCCCCCCATATCAAAACAAAAACCCTTTTCTTTTT
CCTCTTCAAATCCTACAGTCAAACCGTTATTAACCCACAAACCCTTGAGGAATTTGGTGGTTGCTTCTTCTGCAGCTGCGATTGAAGCTGAAACACAAAC
ATCTAGTTCTGCTACTACTCCAGCAAAGTCACTTCCTTTTAGAGTTGGTCATGGATTTGACCTTCATAGATTGGAAGCTGGGTATCCATTGATTATTGGT
GGGATTAATATTCCTCATGATAGAGGCTGTGAAGCTCACTCTGATGGTGATGTTTTACTTCATTGTGTTGTTGATGCAATATTGGGAGCTTTGGGGCTTC
CTGATATCGGGCAGATTTTCCCGGACACTGACCCTAAATGGAAGGGTGCGCCTTCTTCGGTGTTCATGGAAGAAGCTGTGCGTCTAATGCATGAAGCAGG
TTATGAATTGGGAAACCTAGACGCGACTTTGATTCTACAAGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2A1-2D12[[7-10-12]//2B4..JPG