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Details




NbTI02B09

Phenotype Description
Moderately stunted plants, mottled, chlorotic leaves
Annotation
Solyc08g075860.2.1;genomic_reference:SL2.50ch08 gene_region:57100097-57105604 transcript_region:SL2.50ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"
ref|NP_194233.1|;uncharacterized protein [Arabidopsis thaliana]ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana]emb|CAB36745.1| putative protein [Arabidopsis thaliana]emb|CAB79412.1| putative protein [Arabidopsis thaliana]gb|AAM62860.1| unknown [Arabidopsis thaliana]gb|ABD59074.1| At4g25030 [Arabidopsis thaliana]dbj|BAF00395.1| hypothetical protein [Arabidopsis thaliana]dbj|BAH19977.1| AT4G25030 [Arabidopsis thaliana]gb|AEE84993.1| uncharacterized protein AT4G25030 [Arabidopsis thaliana]gb|AEE84994.1| uncharacterized protein AT4G25030 [Arabidopsis thaliana]gb|AGZ13680.1| ICE [Lepidium apetalum]
NbS00025466g0021.1;protein AED:0.31 eAED:0.31 QI:0|1|0.33|1|1|0.66|3|0|353; (*TAIR) AT4G25030.2 (e_value=2e-135) | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344;; (*ITAG) Solyc08g075860.2.1 (e_value=4e-131) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)";
AT4G25030.2;| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
Sequence
>NbTI02B09
CCCTCTTTGTTTTGCCGATCCCTGGAGGGCATCGTTCCTATATTTATTTGTCGATGGCCCGGGCTTAGACAGTCCGCAGAGGCTTCTCCTTGTAAAACAA
CTTCTTGTTCCTGGCTCTGACACAACCAACATTGATGATGGTAAGCATGTGCATTTTGTCAATCCTATTGCCTCTCTGGCAGCTACAATTACGCTCACAA
CCAAGCGATCTGGAGGAGCTTTTGGATTTGATGCATTTTCTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGGGAGGAAACCA
CAAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGCCCAATAGCAAAAATCATATCGAGCTGTAAAGTGGTGTGGCACCACTTGGTGGCAAAGATC
CTGCAACCCCCTCCCAGGCATGAAATTTTAAATGCCCTCAAGCAATAGTCACAGCTCGAGCAGCGATATCAAAAACACCTTTTCGCCAAGAACCTCCGTC
ACACCTTTACCAGCTAAAGTACTAGTGATCGGGATGCTGG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2A1-2D12[[7-10-12]//2B9..JPG