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Details




NbTI02C03

Phenotype Description
Stunted, bushy plants, narrow top leaves
Annotation
Solyc12g055840.1.1;evidence_code:10F0H1E1IEG genomic_reference:SL2.50ch12 gene_region:47199207-47200592 transcript_region:SL2.50ch12:47199207..47200592+ functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 "
ref|XP_009772777.1|;PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Nicotiana sylvestris]
NbS00060861g0001.1;protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|397; (*GB) gi|419789|pir||S31196 (e_value=0.0) hypothetical protein - potato;; (*SWP) sp|Q8L868|E1311_ARATH (e_value=3e-158) Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1;; (*TAIR) AT1G32860.1 (e_value=2e-159) | Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426;; (*ITAG) Solyc12g055840.1.1 (e_value=0.0) evidence_code:10F0H1E1IEG genomic_reference:SL2.40ch12 gene_region:47199207-47200592 transcript_region:SL2.40ch12:47199207..47200592+ functional_description:"Glucan endo-1 3-beta-glucosidase 7 (AHRD V1 ***- B6T478_MAIZE); contains Interpro domain(s) IPR000490 Glycoside hydrolase, family 17 ";
AT1G32860.1;| Symbols: | Glycosyl hydrolase superfamily protein | chr1:11907308-11908803 REVERSE LENGTH=426
GO ID (Nr annotation)
GO:0004553 GO:0005975
GO ID (Arabidopsis annotation)
GO:0004553 GO:0005975
GO ID (Tomato annotation)
GO:0004553 GO:0005975
GO ID (Niben annotation)
GO:0004553 GO:0005975
Sequence
>NbTI02C03
CGTCTTTTATTGATTTTGAGCCCTGTTACGGGGTCTTCAATAGGCGTAAACTACGGGCAAATTGCCGATAACCTTCCTCCGCCGGAGAAAGTGGTTCCGT
TGGTGAAGTCCATGGGTGCAACAAGACTGAAGCTGTTCGAGGCAGATCCACGTGTACTCAAAGCCTTTGCAAATACTAACGTTGAGTTCATTGTTAGCAT
CGGCAATGAGTACCTCGCCGATATGAAGGCACCTGCCAAAGCTCAGGCTTGGGTTAAAACAAACGTCCAAGCCTATTTACCGGCGACAAAAATCACTTGC
ATCGCCGTCGGAAATGAAGTCCTCACGTTTAACGATACTTCGCTTTCCAACAATCTCCTTCCGGGCGCTGGAAAGCGTTTACGCTGCGCTTGTTAGTCTT
CACCTTGACAAACAAGTAAGCGTTAGCACTGCACATTCCCTTGCAATTCTAGAAACTTTCCTACCCGCCGTCCGCCGGAGCTTTTCGCCGAGATTTTGGT
CGACTGTTATTACTCAGGGTGTTGGGATTTCCATTGTAAAACTGGCTCGTATTTTTCAGGATATTGCCTTATCCTTATTTTGGCCTACAAGGGCAAAT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2A1-2D12[[7-10-12]//2C3..JPG