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Details




NbTI02C10

Phenotype Description
Severely stunted plants, thick leaves, very short internode, no apical growth, tiny leaves in intern
Annotation
Solyc06g073300.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch06 gene_region:41549960-41550367 transcript_region:SL2.50ch06:41549960..41550367- functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e "
ref|XP_009619209.1|;PREDICTED: 60S ribosomal protein L27-like [Nicotiana tomentosiformis]ref|XP_009781546.1| PREDICTED: 60S ribosomal protein L27 [Nicotiana sylvestris]
NbS00019183g0004.1;protein AED:0.17 eAED:0.17 QI:0|-1|0|1|-1|1|1|0|135; (*GB) gi|225462170|ref|XP_002267478.1| (e_value=1e-65) PREDICTED: 60S ribosomal protein L27 [Vitis vinifera];; (*SWP) sp|P41101|RL27_SOLTU (e_value=4e-64) 60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1;; (*TAIR) AT4G15000.1 (e_value=7e-63) | Symbols: | Ribosomal L27e protein family | chr4:8571896-8572303 FORWARD LENGTH=135;; (*ITAG) Solyc06g073300.1.1 (e_value=2e-72) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch06 gene_region:41549960-41550367 transcript_region:SL2.40ch06:41549960..41550367- functional_description:"60S ribosomal protein L27 (AHRD V1 ***- A5C1Z2_VITVI); contains Interpro domain(s) IPR001141 Ribosomal protein L27e ";
AT4G15000.1;| Symbols: | Ribosomal L27e protein family | chr4:8571896-8572303 FORWARD LENGTH=135
GO ID (Nr annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Arabidopsis annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Tomato annotation)
GO:0005840 GO:0003735 GO:0006412
GO ID (Niben annotation)
GO:0005840 GO:0003735 GO:0006412
Sequence
>NbTI02C10
CTCCAAGGCAAATATGCCGGCCGTAAGGAAGTGATCATTAGGGCATTCGATGAAGGAACAAGGGACAGGCCATACGGCCATTGTTTGGTTGCAGGTATTT
CCAAGTATCCTAAGAAGGTGATCAGAAAGGACTCAGCCAAAAAGCAGGCGAAGAAGTCACGTGTCAGGGCTTTCATTAAGCTCGTGAATTACAACCACAT
CATGCCCACTCGTTACACGCTCGACGTGGATCTAAAGGATGTTGTCAACGTGGATGTTCTGCAGTCACGTGATAAGAAGGTTACTGCTGCTAAGGAGGCG
AAAGCTAGGCTTGAGGAGAGGTTCAAGACTGGAAAAAATCGTTGGTTCTTCACTAAGCTTAGGGTTCTGAGCGAATGTTGTTTTGGTCCTTGCACTGCTG
GTAATTTTTTATCGCATATGATTAAGATTGACTGTGATTTTTGATGAATATGGTAATATTAGTAGTAGTAAAGGAGTGATGGATAATGTTTTTATCATTA
AGCTACATTTAGTCTGTTTTTGTTTTTGCACTGTTTTGTTTATGAAAGATTACTAGATCCGCTTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2A1-2D12[[7-10-12]//2C10..JPG