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Details




NbTI02F01

Phenotype Description
Moderately stunted plants, cell death in meristem and top leaves
Annotation
Solyc01g057830.2.1;genomic_reference:SL2.50ch01 gene_region:56934925-56939761 transcript_region:SL2.50ch01:56934925..56939761+ functional_description:"30S ribosomal protein S1 (AHRD V1 **-- B4FUZ5_MAIZE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain "
ref|XP_009803358.1|;PREDICTED: 30S ribosomal protein S1, chloroplastic [Nicotiana sylvestris]
NbS00035516g0003.1;protein AED:0.26 eAED:0.26 QI:0|1|0.85|1|1|1|7|0|417; (*GB) gi|225432062|ref|XP_002280604.1| (e_value=0.0) PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera];; (*SWP) sp|P29344|RR1_SPIOL (e_value=0.0) 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1;; (*TAIR) AT5G30510.1 (e_value=0.0) | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416;; (*ITAG) Solyc01g057830.2.1 (e_value=0.0) genomic_reference:SL2.40ch01 gene_region:56934925-56939761 transcript_region:SL2.40ch01:56934925..56939761+ functional_description:"30S ribosomal protein S1 (AHRD V1 **-- B4FUZ5_MAIZE); contains Interpro domain(s) IPR003029 Ribosomal protein S1, RNA binding domain ";
AT5G30510.1;| Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr5:11619262-11621223 REVERSE LENGTH=416
GO ID (Nr annotation)
GO:0003676
GO ID (Arabidopsis annotation)
GO:0003676
GO ID (Tomato annotation)
GO:0003676
GO ID (Niben annotation)
GO:0003676
Sequence
>NbTI02F01
GGAAGCTGGAATATTTCCTGGTTTGCGTGAGGAGTTTGTGGTGGTTGGCGAAAATAAAGCTGATGATAGTTTGGTTTTGAGCTTGCGTTCGATTCAATAT
GACCTTGCATGGGAACGATGTAGGCAGCTACAAGCTGAAGATGTTGTTGTCAAAGGCAAGGTCGTTGGTGCAAACAAAGGTGGAGTGGTGGCTCTGGTGG
AGGGGCTTCGTGGTTTTGTTCCGTTCTCGCAGATATCAACGAAATCAACTGCAGAGGAACTTTTGGAAAAGGAGCTTCCTCTGAAGTTTGTTGAGGTTGA
TGAAGAGCAATCCAGACTTGTGCTCAGCAATCGTAAGGCCATGGCTGATAGTCAGGCACAATTGGGAATAGGCTCAGTCGTTCTTGGAACAGTTCAGAGC
TTGAAACCGTATGGTGCCTTCATTGACATTGGTGGGATCAATGGCCTTCTTCATGTGAGTCAGATCAGTCATGATCGTGTCTCTGATATTGCAACAGTCC
TCCAGCCTGGTGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGTCGAGTGAGCCTTTCAACTAAGAAGCTAGAGCCTACACCTGGTGA
CATGATTCGCAATCCAAAGCTTGTCTTTGAGAAAGCTGAGGAGATGGCCCAAACATTCAGGCAAAGAATTGCC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2E1-2H12[7-9-12]//2F1..JPG