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Details




NbTI02G04

Phenotype Description
Severely stunted plants, thick, mottled, crinkled, chlorotic leaves, no apical growth
Annotation
Solyc08g075860.2.1;genomic_reference:SL2.50ch08 gene_region:57100097-57105604 transcript_region:SL2.50ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)"
ref|XP_006364468.1|;PREDICTED: uncharacterized protein LOC102580945 [Solanum tuberosum]
NbS00027962g0016.1;protein AED:0.19 eAED:0.20 QI:0|0.5|0.2|0.8|0.75|0.6|5|0|399; (*GB) gi|225449106|ref|XP_002276752.1| (e_value=1e-127) PREDICTED: uncharacterized protein LOC100259846 [Vitis vinifera];; (*TAIR) AT5G45410.3 (e_value=1e-111) | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25030.2); Has 124 Blast hits to 124 proteins in 34 species: Archae - 2; Bacteria - 31; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:18402071-18403282 REVERSE LENGTH=342;; (*ITAG) Solyc08g075860.2.1 (e_value=0.0) genomic_reference:SL2.40ch08 gene_region:57100097-57105604 transcript_region:SL2.40ch08:57100097..57105604- functional_description:"Os06g0115800 protein (Fragment) (AHRD V1 *-*- Q0DF43_ORYSJ)";
AT4G25030.2;| Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12865336-12866638 FORWARD LENGTH=344
GO ID (Nr annotation)
GO ID (Arabidopsis annotation)
GO ID (Tomato annotation)
GO ID (Niben annotation)
GO:0016491 GO:0016740 GO:0006793 GO:0018130 GO:0019438 GO:0019752 GO:0044238 GO:0044271 GO:0044711 GO:1901362 GO:1901566
Sequence
>NbTI02G04
CCCTCCTGGCCGAAGGAGGGAATGGGAAATGCTTCATTCCTATATTTCCTTGTCCATGGCCCCAGCTTTGATAGTCCGTTGAGGCCTTTTCTTATAAAAC
AACTTCCTGTTTATGGCTTTGAGACCACCAACATTGCTGATGGTAGGCATGGGAATTTTTGCACGCCTAGTGCCTCTCTGGCACCCACTATCACGCTCTC
AACCATTGTATCTGGTGGGCCTTTTGGATTTGATGCATTTTCTGACATGTTTAAAAATCAAAAGAAGAAGTCAGATTCATCCAAAAATAAGGGAGGAAAC
CACAAAGCCATGGGCGACGAATGGCTTAAAACAGGAAACTGCCCAATAGCAAAATCATATCGAGCTGTAAGTGGTGTGGCACCACTTGGTGGCAAAGATC
CTGCAACCCCCTCCAGGCATGAAATTTTAAATGCCCTCAAGCAATAGTCACAGCTCGAGCAGCGATATCAAAAACACCTTTCGCCAAGAACCTCCGTCCA
CAACCTTTACCAGCTAAAGTACTAGTGATCGGGGATGCTGGGGGCATGGCGTTTAAATGTGCCTTTAGGGGTTCTGGGAGAGAGCACACTGAAAAAGTTT
TCCGGCATCTTGGTTTATAGCTCTTCACGCAGCGGTTTCCATTCATAGGAATACTGAGAAAGTCAGTGGTGATGCCTAAAACAGCTATGGGTATTCATCC
AATAGCAGCATCAGTTTTGGGACAGGGTGATTGGGTC
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:2E1-2H12[7-9-12]//2G4..JPG