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Details




NbTI03A05

Phenotype Description
Plants were similar to vector control plants
Annotation
Solyc12g096470.1.1;evidence_code:10F1H0E1IEG genomic_reference:SL2.50ch12 gene_region:63718803-63721861 transcript_region:SL2.50ch12:63718803..63721861- functional_description:"Transcription initiation factor TFIID subunit 10 (AHRD V1 **** C1BGY2_ONCMY); contains Interpro domain(s) IPR003923 Transcription initiation factor TFIID, 23-30 kDa subunit "
ref|XP_009616050.1|;PREDICTED: transcription initiation factor TFIID subunit 10 isoform X1 [Nicotiana tomentosiformis]
NbS00052083g0010.1;protein AED:0.30 eAED:0.31 QI:146|0.8|0.66|1|0.8|0.83|6|0|142; (*GB) gi|225465617|ref|XP_002266754.1| (e_value=1e-68) PREDICTED: transcription initiation factor TFIID subunit 10 [Vitis vinifera];; (*SWP) sp|Q8K0H5|TAF10_MOUSE (e_value=5e-31) Transcription initiation factor TFIID subunit 10 OS=Mus musculus GN=Taf10 PE=1 SV=1;; (*TAIR) AT4G31720.1 (e_value=1e-68) | Symbols: TAFII15, TAF10, STG1 | TBP-associated factor II 15 | chr4:15354223-15355704 REVERSE LENGTH=134;; (*ITAG) Solyc12g096470.1.1 (e_value=4e-83) evidence_code:10F1H0E1IEG genomic_reference:SL2.40ch12 gene_region:63718803-63721861 transcript_region:SL2.40ch12:63718803..63721861- functional_description:"Transcription initiation factor TFIID subunit 10 (AHRD V1 **** C1BGY2_ONCMY); contains Interpro domain(s) IPR003923 Transcription initiation factor TFIID, 23-30 kDa subunit ";
AT4G31720.1;| Symbols: TAFII15, TAF10, STG1 | TBP-associated factor II 15 | chr4:15354223-15355704 REVERSE LENGTH=134
GO ID (Nr annotation)
GO:0005634 GO:0006352
GO ID (Arabidopsis annotation)
GO:0005634 GO:0006352
GO ID (Tomato annotation)
GO:0005634 GO:0006352
GO ID (Niben annotation)
GO:0005634 GO:0006352
Sequence
>NbTI03A05
TCCGGCGAAGTTGAAACTCCGAACGGCGCCGATCCGCCGTCGAAATGAACCAGAGTCAGAGTCAGGTGGGTCAGCAAACGAGTGAAGGAAGACACGAAGA
TGACACTGCCCTCGCCGATTTCCTTGCTTCCTTAATGGACTATACTCCAACTATTCCAGATGAATTAGTGGAGCATTACTTGGGTAAAAGTGGTTTCCAA
TGCCCTGACGTTCGATTAATAAGGTTGGTGGCAGTTGCCACACAGAAGTTTATTGCCGATGTTGCCACTGATGCTCTCCAGCATTGCAAGGCAAGACAGT
CAGCTATTGTCAAGGATAAAAGAGATAAGCAGCAAAAGGACAAACGCCTTATCTTGACGATGGATGATCTTTCAAAATCTCTACGAGAGTATGGTGTGAA
TGTCAAACATCAAGAATACTTTGCTGATAGCCCGTCTGCTGGGTTAGATCCTGCTTCAAGAGAGGAATGATGTATTGCCTGCCTACAAATCTCTGTAATC
ACATTCGTAGTCTTCTGATGGTTGCGAGGGCATTGTCTTGTCATCTTCTAGATATCTCTAAAGCTATTTGTGTTGAAGGATACAACTTTTGTCTACTTTG
TATCCGATTTACTTATCAATGATAGCTGTAGTTGCCACCATTGTTGGATTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3A5..JPG