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Details




NbTI03A11

Phenotype Description
Mottled leaves
Annotation
Solyc04g039950.2.1;genomic_reference:SL2.50ch04 gene_region:30684287-30705885 transcript_region:SL2.50ch04:30684287..30705885- functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 "
ref|XP_009772431.1|;PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X1 [Nicotiana sylvestris]ref|XP_009772432.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X1 [Nicotiana sylvestris]ref|XP_009772433.1| PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X1 [Nicotiana sylvestris]
NbS00016757g0011.1;protein AED:0.18 eAED:0.20 QI:0|0.62|0.52|0.96|0.75|0.76|25|0|1902; (*GB) gi|359478798|ref|XP_002283658.2| (e_value=0.0) PREDICTED: uncharacterized protein LOC100263945 [Vitis vinifera];; (*SWP) sp|F4I096|MED13_ARATH (e_value=0.0) Mediator of RNA polymerase II transcription subunit 13 homolog OS=Arabidopsis thaliana GN=GCT PE=1 SV=1;; (*TAIR) AT1G55325.2 (e_value=0.0) | Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20647714 FORWARD LENGTH=2001;; (*ITAG) Solyc04g039950.2.1 (e_value=0.0) genomic_reference:SL2.40ch04 gene_region:30684287-30705885 transcript_region:SL2.40ch04:30684287..30705885- functional_description:"Mediator of RNA polymerase II transcription subunit 13 (AHRD V1 *-*- MED13_DICDI); contains Interpro domain(s) IPR009401 Mediator complex, subunit Med13 ";
AT1G55325.2;| Symbols: GCT | RNA polymerase II transcription mediators | chr1:20637594-20647714 FORWARD LENGTH=2001
GO ID (Nr annotation)
GO:0016592 GO:0001104 GO:0006357
GO ID (Arabidopsis annotation)
GO:0016592 GO:0001104 GO:0006357
GO ID (Tomato annotation)
GO:0016592 GO:0001104 GO:0006357
GO ID (Niben annotation)
GO:0016592 GO:0001104 GO:0006357
Sequence
>NbTI03A11
ACAAGTGGAAATTTTATGCAGAGTTCAGCTTCTTCAGGTGGCGGAGACACTGGACCAAACACACAGTCTGAAACATCTGAATCAGATGGCTCTGGTTCTG
CACATCGAAAGTCACTTCCAAGCCTGCATTGTTGTTATGGATGGACTGAGGATTGGCGCTGGCTGGTTTGTATATGGACAGATTCCAGGGGAGAATTGCT
TGATAATTATATATATCCATTTGGAGGAATTAGTAGTAGGCAGGATACGAAAGGTTTGCAATCCTTGTTTGTGCAAATTCTGCAGCAAGGGATGCCAGAT
ACTTCAGGCATGTCCTCCTGAGTCTGCCATTGCCAAGCCTAGGGATTTTGTTATTGCACGTATTGGAAGCTTCTTTGAGCTTGAATGCCAGGAATGGCAG
AAAGCCCTGTATGCAATTGGGGGGATCTGAAGGTGAAGAAATGGTCTCTGCAGCTAAAGACGATCTGTGCCTGATGGAATG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

2-1:3A1-3D12[7-12-12]//3A11..JPG