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Details




NbTI11A06

Annotation
Solyc03g117740.2.1;genomic_reference:SL2.50ch03 gene_region:60839793-60842602 transcript_region:SL2.50ch03:60839793..60842602+ functional_description:"Chloroplast At1g16080 protein (Fragment) (AHRD V1 *-*- Q1HRY1_SOLLC)"
ref|XP_009757383.1|;PREDICTED: uncharacterized protein LOC104210232 [Nicotiana sylvestris]
NbS00026409g0012.1;protein AED:0.14 eAED:0.14 QI:155|1|1|1|1|1|5|476|310; (*GB) gi|225443239|ref|XP_002271931.1| (e_value=1e-168) PREDICTED: uncharacterized protein LOC100263834 [Vitis vinifera];; (*TAIR) AT1G16080.1 (e_value=4e-165) | Symbols: | unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr1:5514394-5515761 FORWARD LENGTH=313;; (*ITAG) Solyc03g117740.2.1 (e_value=0.0) genomic_reference:SL2.40ch03 gene_region:60839793-60842602 transcript_region:SL2.40ch03:60839793..60842602+ functional_description:"Chloroplast At1g16080 protein (Fragment) (AHRD V1 *-*- Q1HRY1_SOLLC)";
AT1G16080.1;| Symbols: | unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | chr1:5514394-5515761 FORWARD LENGTH=313
GO ID (Nr annotation)
GO:0016491 GO:0055114
GO ID (Arabidopsis annotation)
GO:0016491 GO:0055114
GO ID (Tomato annotation)
GO:0016491 GO:0055114
GO ID (Niben annotation)
GO:0016491 GO:0055114
Sequence
>NbTI11A06
AAACCCATTTCAAGAATCAACCTCAATTTCAGAATTAGAGCATCATTATCCACCTCAGCTAATATGGCTACTAGCACCACAACAAAAGTAGCTCCTGCAA
TCATAGTCGGAGGTGGACGTGTGGGCAGAGCTTTACAAGATTTGGGTAATGGAGATGATGTTTTGGTTAAAAGGGGTGAACCTGTTCCCGTTGATTTTGC
TGGTCCAATTTTGGTTTGCACTAGGAATGATGATCTTGAAGCAGTACTTGAAGCTACTCCTAAATCTCGTTGGAGCGATTTGGTATTTTTCCAGAATGGA
ATGCTGGAGCCTTGGTTCCAAAGTAAAGGTCTCAGTGATGCAGACCAAGTTTTGGCATATTTTGCAGTATCAAAGCTTGGTGAACCCCCTACTGATGGGA
AAACTGATACCAATCCAGAAGGATTGACTGCAGCTTATGGAAAATGGGCATCTGCAGTGGCTGCAAGATTACAGACTGGTGGACTCTCTTGCAAGGTACT
TGAGAAGGAGCCTTTTCAGAAGCAAATGTTGGAGAAGCTTATATGGATATGTGCTTTCATGCTTGTTGGAGCTCGTCATCCTGGAGCAACAGTAGGTGCT
GTTGAAAAAGAGTATCGCTCTGAGGTGTCTCAACTGATCGCTGAGCTTGCAGCTGCAGCAGCTGCAGAGAAAGGTCTAGTTTTTGAGGATGCGATGGAGG
ATAGGCTGTGCGCTTACTCCCGAGCGGTTGCACACTTTCCAACAGCTGTCAAGGGAGTTCAAATGGAGAAACGGATG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit