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Details




NbTI11B02

Annotation
Solyc03g120640.2.1;genomic_reference:SL2.50ch03 gene_region:63030273-63032006 transcript_region:SL2.50ch03:63030273..63032006+ functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI "
ref|NP_001289499.1|;photosystem I reaction center subunit VI-1, chloroplastic-like precursor [Nicotiana sylvestris]emb|CAA43841.1| photosystem I psaH protein [Nicotiana sylvestris]
NbS00025048g0006.1;protein AED:0.42 eAED:0.52 QI:0|0.5|0|1|1|1|3|0|145; (*GB) gi|407353|dbj|BAA04633.1| (e_value=4e-61) PSI-H precursor [Nicotiana sylvestris];; (*SWP) sp|P22179|PSAH_SPIOL (e_value=3e-51) Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1;; (*TAIR) AT1G52230.1 (e_value=7e-51) | Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145;; (*ITAG) Solyc06g066640.2.1 (e_value=2e-61) genomic_reference:SL2.40ch06 gene_region:38268035-38269441 transcript_region:SL2.40ch06:38268035..38269441+ functional_description:"Photosystem I reaction center subunit VI-1, chloroplastic (AHRD V1 ***- PSAH1_ARATH); contains Interpro domain(s) IPR004928 Photosystem I reaction centre subunit VI ";
AT1G52230.1;| Symbols: PSAH2, PSAH-2, PSI-H | photosystem I subunit H2 | chr1:19454902-19455508 FORWARD LENGTH=145
GO ID (Nr annotation)
GO:0009538 GO:0015979
GO ID (Arabidopsis annotation)
GO:0009538 GO:0015979
GO ID (Tomato annotation)
GO:0009538 GO:0015979
GO ID (Niben annotation)
GO:0009538 GO:0015979
Sequence
>NbTI11B02
TTCTGAAAATAGTTTTGTTAGTTTGGAGTGAAAAGCCATGGCATCTTTGGCAGCCTTTGCTGCAGTGCAGCCCACTACCAATGTCAAGGGCCTAGCTGGA
AGCTCCATTACTGGAACTAAGCTTCATCTCAAATCATCTCGCCTCAATTTGAAGACCACTAAATCCAGGGCCGGCCCTGTGGTTGCCAAATATGGTGACA
AGAGTGTATACTTTGATTTGGAGGATTTGGGCAACACCACTGGCCAGTGGGACCTGTATGGATCAGATGCACCTTCACCATACAACTCTCTTCAGAGCAA
GTTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGTCTTTTGCTCAAATTCTTGATATTGGGAGGTGGCTCCACCCTTGCTTACTTCAGTTCGACA
GCATCAGGGGATATCCTACCAATCAAGAAAGGTCCACAACTTCCACCCAAGCTCGGCCCACGCGGCAAGATCTAATTGCTTTCGGTCCAAAATTCAACCT
TCAATTTGTAATTGATGTATGTTTCCCCAGTTTGTGTAAGTATAATTGAAGACTTTCCATTATAACAAGTTATATCTTATGGAAAATTTGTAGCATTGCT
TTCTT
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit