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Details




NbTI11E10

Annotation
Solyc01g108500.2.1;genomic_reference:SL2.50ch01 gene_region:87565501-87571455 transcript_region:SL2.50ch01:87565501..87571455- functional_description:"Polyadenylate-binding protein (AHRD V1 **-* PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait "
gb|AAC49850.1|;DNA binding protein ACBF [Nicotiana tabacum]
NbS00001452g0014.1;protein AED:0.14 eAED:0.14 QI:252|0.75|0.6|1|0.75|0.8|5|543|402; (*GB) gi|2708532|gb|AAB92518.1| (e_value=5e-177) putative RNA binding protein [Nicotiana tabacum];; (*SWP) sp|Q9LEB3|RBP47_NICPL (e_value=2e-178) Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1;; (*TAIR) AT3G19130.1 (e_value=6e-114) | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435;; (*ITAG) Solyc01g108500.2.1 (e_value=4e-167) genomic_reference:SL2.40ch01 gene_region:87565501-87571455 transcript_region:SL2.40ch01:87565501..87571455- functional_description:"Polyadenylate-binding protein (AHRD V1 **-* PABP_DROME); contains Interpro domain(s) IPR012677 Nucleotide-binding, alpha-beta plait ";
AT3G19130.1;| Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B | chr3:6611398-6613823 REVERSE LENGTH=435
GO ID (Nr annotation)
GO:0000166 GO:0003676
GO ID (Arabidopsis annotation)
GO:0000166 GO:0003676
GO ID (Tomato annotation)
GO:0000166 GO:0003676
GO ID (Niben annotation)
GO:0000166 GO:0003676
Sequence
>NbTI11E10
CGATGCAGTATCCAGCTGCAGCAATGGCGATGCAGCAACAGATGATGTATGGTCAGCAATACATGCCTTACTATCAGCAACATCAACAGCAGCAGAAGAT
GCAGCAGTCTCCTGCTCAGATTCAGAGCTCATCTGAAGATAATAAAACGATCTGGATTGGCGATCTTCAGCAGTGGATGGATGAAAGTTATCTTCATTCT
TGCTTTTCTCAGGCTGGCGAGGTTATTTCTGTGAAAATTATTCGAAACAAGCAGACTGGTCAATCAGAGCGTTATGGATTTGTTGAGTTCAATACTCACG
CAGCAGCGGAGAAAGTGCTACAGAGCTACAATGGCACTATGATGCCTAACGCAGAGCAACCCTTCCGTTTAAACTGGGCTGGCTTTAGCACTGGTGAAAA
GCGTGCAGAAACTGGTTCTGATTTCTCGATTTTTGTAGGAGATTTGGCTTCTGATGTTACTGACACAATGTTGCGTGACACATTCGCTAGCAGATATCCA
TCTCTTAAAGGTGCAAAAGTAGTAGTAGATGCAAACACAGGCCACTCAAAAGGCTATGGCTTTGTAAGGTTTGGTGACGAAAGCGAGAGGTCTCGTGCCA
TGACTGAAATGAATGGTGTATATTGTTCCAGCAGGGCCATGCGTATTGGTGTTGCTACCCCAAAGAAACCATCAGCGCAGCAACAATATTCTTCCCAAGC
TGTGATATTATCTGGTGGATATGCATCAATGGTGCTGCACCCCATGGATCACAGTCCGATGGTGATTCATCAACACTACAATTTTTGTTGGAGGA
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit