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Details




NbTI12B07

Annotation
Solyc04g082010.1.1;evidence_code:10F1H1E1IEG genomic_reference:SL2.50ch04 gene_region:63418757-63419269 transcript_region:SL2.50ch04:63418757..63419269- functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain "
gb|ACV32157.1|;chloroplast plastocyanin precursor [Nicotiana benthamiana]
NbS00030369g0003.1;protein AED:0.31 eAED:0.31 QI:0|-1|0|1|-1|1|1|0|169; (*GB) gi|256860445|gb|ACV32157.1| (e_value=3e-101) chloroplast plastocyanin precursor [Nicotiana benthamiana];; (*SWP) sp|P17340|PLAS_SOLLC (e_value=9e-84) Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1;; (*TAIR) AT1G20340.1 (e_value=7e-68) | Symbols: DRT112, PETE2 | Cupredoxin superfamily protein | chr1:7042770-7043273 REVERSE LENGTH=167;; (*ITAG) Solyc04g082010.1.1 (e_value=6e-85) evidence_code:10F1H1E1IEG genomic_reference:SL2.40ch04 gene_region:63418757-63419269 transcript_region:SL2.40ch04:63418757..63419269- functional_description:"Plastocyanin (AHRD V1 ***- Q0W9E5_SOLCO); contains Interpro domain(s) IPR000923 Blue (type 1) copper domain ";
AT1G20340.1;| Symbols: DRT112, PETE2 | Cupredoxin superfamily protein | chr1:7042770-7043273 REVERSE LENGTH=167
GO ID (Nr annotation)
GO:0005507 GO:0009055
GO ID (Arabidopsis annotation)
GO:0005507 GO:0009055
GO ID (Tomato annotation)
GO:0005507 GO:0009055
GO ID (Niben annotation)
GO:0005507 GO:0009055
Sequence
>NbTI12B07
AAAGCATCAGCATCATATATATGATAACAATGGCCACTGTCACCTCTGCTGCTGTTGCTATCCCATCTTTCACTGGCCTTAAGGCTGGTGCTTGCTCAAC
TTCCAGAGTTAGCACCACCGCCAAGGTGGCCGCCTCTACCCCAGCCACCAAGTTGGCGGTGAAGGCTTCTTTGAAAGACGTTGGTGCTGTCGTTGTTGCC
ACCGCAGCTAGTGCTATGCTTGCTAGCAATGCCATGGCTATTGAAGTGTTGCTTGGTAGCGATGATGGCGGTCTAGCTTTTGTTCCTGGAAACTTCAGCG
TAAGCTCCGGTGAGAAAATTACATTCAAGAACAATGCTGGGTTCCCCCACAACGTTGTATTTGATGAAGATGAAATCCCAGCTGGTGTTGATGTAAGTAA
GATTTCCATGCCTGAAGAGGAATATCTGAATGGACCAGGGGAAACTTACTCTGTTACTTTGAATGAGAAAGGAACTTACAGTTTCTACTGTGCACCTCAT
CAGGGAGCTGGAATGGTTGGCAAAGTTACTGTTAACTAACTTCTCACTTTTGTATCATGTAAAACTTGATTTGAATTCGCATCATTTCACAATTTTCGTT
TCAACATTGTCCTTCTTTTTGAGGTAAGGAGAACTCAGAAGAGTTACATATTTACTGATGTGGCTGGGGATTTAAATTGTATCATGGTTGAGGGTAAAAA
TTAAATGATCTCATTTTATGATTATACAACTTTTCTGGACTGTAATGTTG
More analysis about the clones: Nicotiana benthamiana resources at Boys Thomson Institute
To find off target genes: siRNA scan
To predict efficiency of siRNA: pssRNAit

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